BAC Information

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BAC

Clone NameMSMg01-475P13
Chromosome9 (Build37)
Map Location 105,220,421 - 105,220,656
singlet/doubletsinglet
Overlap geneNek11
Upstream geneAcpp, LOC100040921, Cpne4, Mrpl3, Nudt16, 1700080E11Rik
Downstream geneAste1, Atp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475P13.T7 (MSMg01no475_p13.b1)MSMg01-475P13.TJ (MSMg01no475_p13.g1)
ACCAG557673AG557674
length786767
length of high quality
(start - end)
248 (77 - 324)236 (74 - 309)
definitionCHROMAT_FILE: MSMg01no475_p13.b1 PHD_FILE: MSMg01no475_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:55 2005CHROMAT_FILE: MSMg01no475_p13.g1 PHD_FILE: MSMg01no475_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGCAACATCCG
CGGAATTCTCCTGACTGCCATATCTACCAGCTCAATTCGATGGAGACTTA
AGTTGTTTAAAAGGTGGAGATGAGGGGGTTCTGGAGTGGCTCTCATGAAT
CCCAGGCTGGCCTTCAACTATGTAGCCAAGGAGGATCTTAAACTTCTGGT
CCTCCTCTCTGAGCACTGGGGTGACAGGTGTTTGCCACCATGCCATTTAT
GCAGTGTTTGGGGCTGGTCTCAGGCTCCCATGAATGCTAGGCAAAGCTAC
AGGAGCTACATCCCTGGGATTTGAGTANCTTGAAATCTGAGACTTTTCAA
AAGATCCACATCATTTTTAGGAGCAGTCCTGAAATAAAATAAAATAACAT
AACATAAAATAACATACACCACCATAAAATAAAATAAAATAAAATAAAAT
AAAAATAACAAAATCGTCCTCTGGACTATGAACAACATCCCAAGATCCCT
GATTAATAAGTGGTTCCCTGCACGTTCTGACTTAATTCCGCCTCCCTCAT
GGCCTTTTCACCCGTTCCCCCCCGCAACATACTCTTTTGTTCATCCTTTC
CTTTACCCCCTCTTTCTCGCCTTTTATCCCCCCCTTTTCCCCCCCCTCCA
CTGTCCACCGTCCCTATTCTTTTTTCTTTTTTCATCCCCCCTACCCTTCC
TTTCCCCCTTTATCCCCCCGTGTACTTACCCTTTTCCTATCCCCTCTTTA
TCTTCCGCTCCTTTTTCCCCCCATCTCTTCCCCTTN
CCCCCGATGATATGGGAGGCCTGGGGGCGCCTGTTTCACAACATTAGGTG
ACCTATAGAAGTACCGCGACATTCATTTCCTGGGGAGGGCACCCGCTTGG
GAATCCGTGCCGTATATTTGGCTGAGGAAGGAGGTGACCTTCCAGACTCT
GGAAGATGGGAAATGCTGAGCTGACTGTGGTGTCTGGTATCGCTTGAGCT
CCCTCCCACCCCCCATGTCCTCTTCTCGAGGATGTCCTGTGGTCAGTTCC
GGTCAGTGCATTTCCACACCAAGTCAAGCAGACTTCTGATGTGTTGGCTA
TAGCCGGGGATTTTTTTTTGACCTAACCTCGACCTCTTGACTCCAACATG
GGGCTCATAATCAAGGAGGCCTTGGAGCTCAGGATGAGGTCACATGTCCA
AGGAAGGAACTGGGGCTTTTCAGGCTGAGCATCATCAAGGAGTCAGTGGG
CAGGTGTGGCCTCTGAGACGAAGAGTTTGCAGTGCACAGTGACGACCTGT
CTAGTGATATACCCGCAGGTATTGTACCTCATGCGTTTGACACTACCTAC
CTAGGTTCTACCGCCTCGTTTTCCCCTTTTCCTGTCGCTCGCTTCGCTAC
CCCCCTTTGTTTTCCCTCTGTGTTCCCCCCCCCCTCTCACCACTTTTTTT
CTCTTTTTCGTTTCCCCTTTTCTCGTCTGTTCCCCCTTCCCTTCCCTTTC
TTTTCCCCTCTGTTCCGCCCTTCCCCCATTTCCCTCTCTTTCCCCCCCTT
TCTCCTCTTTATTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_p13.g1 MSMg01no475_p13.g1 CHROMAT_FILE:
MSMg01no475_p13.g1 PHD_FILE: MSMg01no475_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:55 2005
         (236 letters)



>mm_chr9_105220221_105220856
          Length = 636

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttcctggggagggcacccgcttgggaatccgtgccgtatatttggctgaggaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catttcctggggagggcacccgcttgggaatccgtgccgtatatttggctgaggaaggag 377

                                                                       
Query: 61  gtgaccttccagactctggaagatgggaaatgctgagctgactgtggtgtctggtatcgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtgaccttccagactctggaagatgggaaatgctgagctgactgtggtgtctggtatcgc 317

                                                                       
Query: 121 ttgagctccctcccaccccccatgtcctcttctcgaggatgtcctgtggtcagttccggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttgagctccctcccaccccccatgtcctcttctcgaggatgtcctgtggtcagttccggt 257

                                                                   
Query: 181 cagtgcatttccacaccaagtcaagcagacttctgatgtgttggctatagccgggg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cagtgcatttccacaccaagtcaagcagacttctgatgtgttggctatagccgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)