BAC Information

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BAC

Clone NameMSMg01-476B08
Chromosome9 (Build37)
Map Location 8,071,339 - 8,071,874
singlet/doubletsinglet
Overlap genenone
Upstream geneDync2h1, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik
Downstream geneAK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476B08.T7 (MSMg01no476_b08.b1)MSMg01-476B08.TJ (MSMg01no476_b08.g1)
ACCAG557758AG557759
length760755
length of high quality
(start - end)
554 (46 - 599)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no476_b08.b1 PHD_FILE: MSMg01no476_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:04 2005CHROMAT_FILE: MSMg01no476_b08.g1 PHD_FILE: MSMg01no476_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTTTCCCATTATCTACACTCCCTGCAGATAGAACTTTGGCCTT
GAATCCTAGACAAACTTGTTTAACATGCATTGCTTTCTTAGTCTTTCTAG
GAGAGGAAAGAGGTGCTGCAAATTGGTCATTTGGAAACAGAGCTGAAGCC
CAAGGTCTCTATCCATATTCATAAGCCAATTTCTTCATCCTTATATAGTT
CTAGGCTTGTAGAGATTTTCTCAGACACTCGACGGTTCTCTTTGTGCACT
ATTACTGGCACAGGAGTTAAATGAACACCCGAGGTCATTATTTGCTCGTA
TATATTGTGATCCAACAGAAAGGCCTCTTGAAGTACAGGCCTAAGGGAAG
CATGTTAACTCTTTCTTAATCTTATTTAATTTAATTTATTTGTCTAGAAA
GGGCAATTAGAAGATGAAACATGAGGTAGTTTGAAATGAAACTTATTACA
TATTTTCACTTTTATGGTAGGGGGCAGGAAGGAAGGAGGGAGAAAAAGAC
AGAGCTTTCCACAGCACATACGCTGACAGAGAACAACTCACGGGAGTCAG
TTCTCTCCGTCCATAGTGCATGCTCCAGGGATGGAGCACAGTTGAGTTTC
TGGCTAGGTCTCAACCCCATGCAGCGTAGCTCACAACTGCCTGTACCTCC
AGCTCCAGGAGATCTGTGGCCTTCTCCTTGACTCCACAGAATTAACACCC
AGGCATTTTT
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTCCTTCAGCAGGCAAGGCAA
TCCTTTTGCTGGGCTTGAGACAGGGTCTCACTTTGCAACTCTCGCTGGCC
TGCAAGTCCTGTAGAGTAGCTTGCTCCCAGCCTCCCATGAATGCTATACA
AGTGCTCTACCACATCCTCGCTCTCCCCACAGAGATCTCTTTTGAACTAT
CTTGTAGGTATTCACCACACACTGGTTGAATAAAATACTAGCTTCTCCTA
TGGCTCTATCTCTTCTTTTTATATGGGATGGCAACTCAGCACCATGACTC
CCTGTCCCATCTTCAAGCTCTTCTAGAATGTCTGGCAGTGTTCTCAGCAC
TCCTTTATCAAGGCTCTTCTTTTCTTGAATAATACAGTTTATTCTTTCAG
AATTTTGTACAGGTACACTGTATTTTGATCGTACCATACCCCTCAGGCTT
CCCACAGACTCTAGCCCTATTTGTCCCCTCCCAACTTTATGTCCTTTTCT
TGTACAAGATGAGTCAGTGTAGAGCCATCCATTGGAGCACAGCCACAGTG
GTCACACTCTGAGAGAGAAACGGCTCTTTCCCCCACACAGCAGCCATCAG
TTGTTAGTAACTAGAGGTGAGGCCTCATAATTGCTTTTTCATTTCATCTG
CAGGTTCCCTGGCTTGAACTTTGTCCGGCGTGGGCTCCCAAAGGCACAAC
CCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_b08.b1 MSMg01no476_b08.b1 CHROMAT_FILE:
MSMg01no476_b08.b1 PHD_FILE: MSMg01no476_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:04 2005
         (554 letters)



>mm_chr9_8071121_8072074
          Length = 954

 Score = 1029 bits (532), Expect = 0.0
 Identities = 535/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 19  cattatctacactccctgcagatagaactttggccttgaatcctagacaaacttgtttaa 78
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cattatctacattccctgcagatagaactttggccttgaatcctagacaaacttgtttaa 695

                                                                       
Query: 79  catgcattgctttcttagtctttctaggagaggaaagaggtgctgcaaattggtcatttg 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 catgcattgctttcttagtctttctaggagaggaaagaggtgctgcaaattggtcatttg 635

                                                                       
Query: 139 gaaacagagctgaagcccaaggtctctatccatattcataagccaatttcttcatcctta 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaaacagagctgaagcccaaggtctctatccatattcataagccaatttcttcatcctta 575

                                                                       
Query: 199 tatagttctaggcttgtagagattttctcagacactcgacggttctctttgtgcactatt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tatagttctaggcttgtagagattttctcagacactcgacggttctctttgtgcactatt 515

                                                                       
Query: 259 actggcacaggagttaaatgaacacccgaggtcattatttgctcgtatatattgtgatcc 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 actggcacaggagttaaatgaacacccgaggtcattatttgctcgtatatattgtgatcc 455

                                                                       
Query: 319 aacagaaaggcctcttgaagtacaggcctaagggaagcatgttaactctttcttaatctt 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aacagaaaggcctcttgaagtacaggcctaagggaagcatgttaactctttcttaatctt 395

                                                                       
Query: 379 atttaatttaatttatttgtctagaaagggcaattagaagatgaaacatgaggtagtttg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atttaatttaatttatttgtctagaaagggcaattagaagatgaaacatgaggtagtttg 335

                                                                       
Query: 439 aaatgaaacttattacatattttcacttttatggtagggggcaggaaggaaggagggaga 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaatgaaacttattacatattttcacttttatggtagggggcaggaaggaaggagggaga 275

                                                                   
Query: 499 aaaagacagagctttccacagcacatacgctgacagagaacaactcacgggagtca 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaagacagagctttccacagcacatacgctgacagagaacaactcacgggagtca 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)