BAC Information

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BAC

Clone NameMSMg01-476H04
Chromosome9 (Build37)
Map Location 4,425,849 - 4,426,258
singlet/doubletsinglet
Overlap geneGria4
Upstream geneCwf19l2, LOC384911, Gucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476H04.T7 (MSMg01no476_h04.b1)MSMg01-476H04.TJ (MSMg01no476_h04.g1)
ACCAG558038AG558039
length761772
length of high quality
(start - end)
379 (72 - 450)416 (78 - 493)
definitionCHROMAT_FILE: MSMg01no476_h04.b1 PHD_FILE: MSMg01no476_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:33 2005CHROMAT_FILE: MSMg01no476_h04.g1 PHD_FILE: MSMg01no476_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTTATCACATATCAAATGGCTGAGAAACACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAATCCTGAG
ATTCCACCTCACACCATTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTAG
TGGGATTGCAAGCTTTAAAACCACTCTGGAAATAAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTACTACCATTGGATCCCACAATACCTCTCCTGGG
CATATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTTTTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCCGCTATTAAAAAGATTGAATTTATTAAATTCCCAGGCAA
ATGGATGGAACTGTATGGCCTCCTCCCGAGTGAGGCAATCCCACCCGAAA
CGGCTCTCATATCATGCCTCCTTGATTAGGCGTTTTTTATTCCCCAAACG
TACGCATTTTCCCAACAACGTTTTACTTGCCCATCCCCCGCTTTTTTTTC
CCCTATTATAATATCCCCTTCCCCTTTTTTCGCCCCTCTATTCTCCCTCC
CCTGCCCAGTC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGAGCAAGGCAGAAACAC
ATAGGCTGAGTCTGCGAAGTAAAGTTACATGTTTATTATCATTGGAAAAA
AATGTTATCAATGGTTCATCATACATATAGAATGTATTTAAGAGAGGCCA
GATGATACACACATTTAATTCCAACATTCAGGAAGCTCCTACGCCATAAA
TAAAGATTTTTTTTTTTTTTTTACTTTTTTGGAAGTTTTTGGATATCACA
TTCTATAAAGGAATCAAATTGGTATTTATTCTGAGACATTGAAATATGTG
ACTGACTAAAATTTGGAAAGTTTCTATTAATTCTAAGGAACAAAGTCAGA
TTAAAATGCCATTTTTCAGAACTTACACATGTTTAGTCATTACAGTCTGC
CTTTGAACAAGAGCGCAATATGACAAGCTTGGTCATGTAACAAACTGTCA
CCTTGTGTCCTGTTGTAAAGTAAGAAAAATTCACCTAATTAAAACCCAGT
TACCTTAAAATAATATCGGCCAGCTCACCACTGACTATTTTCTGCAAGGG
ACATGCCTTCCCTTGCAATGTTTAATTCCCTCCCTTTATTACCGGATAAA
TTTGAACCCCACTCTTGCCCTTATTAGGTTTTCCAGTTATTTCTGTCCGC
CTCTCCTCATTTCTTTCGATCCTTGTACTCTTTATGCCCCCCTTACCGCT
CCCTTTGTTCATCCCTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_h04.g1 MSMg01no476_h04.g1 CHROMAT_FILE:
MSMg01no476_h04.g1 PHD_FILE: MSMg01no476_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:34 2005
         (416 letters)



>mm_chr9_4425453_4426268
          Length = 816

 Score =  756 bits (391), Expect = 0.0
 Identities = 407/413 (98%), Gaps = 3/413 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacagagcaaggcagaaacacataggctgagtctgcgaagtaaagttacatgtttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tttacagagcaaggcagaaacacataggctgagtctgcgaagtaaagttacatgtttatt 747

                                                                       
Query: 61  atcattggaaaaaaatgttatcaatggttcatcatacatatagaatgtatttaagagagg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 atcattgg-aaaaaatgttatcaatggttcatcatacatatagaatgtatttaagagagg 688

                                                                       
Query: 121 ccagatgatacacacatttaattccaacattcaggaagctcctacgccataaataaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 687 ccagatgatacacacatttaattccaacattcaggaagctcctacgccataaataaaga- 629

                                                                       
Query: 181 tttttttttttttttacttttttggaagtttttggatatcacattctataaaggaatcaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 -ttttttttttttttacttttttggaagtttttggatatcacattctataaaggaatcaa 570

                                                                       
Query: 241 attggtatttattctgagacattgaaatatgtgactgactaaaatttggaaagtttctat 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 attggtagttattctgagacattgaaatatgtgactgactaaaatttggaaagtttctat 510

                                                                       
Query: 301 taattctaaggaacaaagtcagattaaaatgccatttttcagaacttacacatgtttagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taattctaaggaacaaagtcagattaaaatgccatttttcagaacttacacatgtttagt 450

                                                                
Query: 361 cattacagtctgcctttgaacaagagcgcaatatgacaagcttggtcatgtaa 413
           |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 449 cattacagtctgcctttgaacaagagtgcaatatgacaagcttggccatgtaa 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)