BAC Information

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BAC

Clone NameMSMg01-476J07
Chromosome9 (Build37)
Map Location 91,343,474 - 91,343,995
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476J07.T7 (MSMg01no476_j07.b1)MSMg01-476J07.TJ (MSMg01no476_j07.g1)
ACCAG558137AG558138
length771761
length of high quality
(start - end)
527 (46 - 572)539 (75 - 613)
definitionCHROMAT_FILE: MSMg01no476_j07.b1 PHD_FILE: MSMg01no476_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:44 2005CHROMAT_FILE: MSMg01no476_j07.g1 PHD_FILE: MSMg01no476_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTTTTCACCTGTCTTTTACTTTCAGGAGATCCTTCTGGATAG
CCTTCTATTTACCTTTAACACTTGAATTTAGATAAGTTTTGTATAGCGAA
ACAATGGATTATATGTAAGCAATAAAAATTAACTGAACTGAGTAGAATCA
AGCACATGTTTACTCCTTGTCAGAAACAACTAGCTGTTTTGTTTAAAAGA
ATATTCTCATAATCCATTTCTATGGATGGAGTCATGCATTTTAATTAATT
ATGAGACAGGGTCTTCTAATTATTGCCAGCCAGTCTAAGGCCCATTATGT
TCCTGCCTACTTTCTCTTATGCTGGGGTGACAGACTTGTATGACATAGTC
CAGGTGCAGATGACATATACAGTTGTCATCTACTGCATATCAGGTAACCA
AAATAGAAAAGTTTCAAAGTGTTCATCCATTACTAAGTGGAAATAGAGAT
AAGTTAACTTTGTAATTATGAGGGCAGAATTTTAAAATTCCTTTGCTATA
AGTTATATTCTAAATAACTGTGACTAGAAAGCATTTCAGTGCACACATTC
CATTAGACATATTTCCATTATATATTGGAAGACAGCTTTTACTGGGATGA
ATTTTGTAGAAGAAATTGGAATTGACATTTGGACTTTGTTGGCAATTTCT
TAAAGGTTTTCTATTCCTACGGGGAATTGCCCGGGGAAACCCTTTAAGAA
CTTACTACTTTTTGAAAAAAN
NCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCATATTACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACTTGGAGGGCATCATCCTGAGTG
AGGTAACACACTCACAAAGAAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCCTTATCTAGGATACCCAAGATATAAGATATAATTTGCT
AAACCCATGAAACTTCTAGGAGAATGAAGATTGACGTGCGGACCCTATGT
CCCTTCTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_j07.b1 MSMg01no476_j07.b1 CHROMAT_FILE:
MSMg01no476_j07.b1 PHD_FILE: MSMg01no476_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:44 2005
         (527 letters)



>mm_chr9_91343270_91344195
          Length = 926

 Score =  949 bits (491), Expect = 0.0
 Identities = 515/523 (98%), Gaps = 1/523 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcttttcacctgtcttttactttcaggagatccttctggatagccttctatt 64
           |||||||||||| |||  ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcttctca-gtgtcttttagtttcaggagatccttctggatagccttctatt 263

                                                                       
Query: 65  tacctttaacacttgaatttagataagttttgtatagcgaaacaatggattatatgtaag 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacctttaacacttgaatttagaaaagttttgtatagcgaaacaatggattatatgtaag 323

                                                                       
Query: 125 caataaaaattaactgaactgagtagaatcaagcacatgtttactccttgtcagaaacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caataaaaattaactgaactgagtagaatcaagcacatgtttactccttgtcagaaacaa 383

                                                                       
Query: 185 ctagctgttttgtttaaaagaatattctcataatccatttctatggatggagtcatgcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctagctgttttgtttaaaagaatattctcataatccatttctatggatggagtcatgcat 443

                                                                       
Query: 245 tttaattaattatgagacagggtcttctaattattgccagccagtctaaggcccattatg 304
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 444 tttaattaattatgagacagggtcttctaagtactgccagccagtctaaggcccattatg 503

                                                                       
Query: 305 ttcctgcctactttctcttatgctggggtgacagacttgtatgacatagtccaggtgcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcctgcctactttctcttatgctggggtgacagacttgtatgacatagtccaggtgcag 563

                                                                       
Query: 365 atgacatatacagttgtcatctactgcatatcaggtaaccaaaatagaaaagtttcaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgacatatacagttgtcatctactgcatatcaggtaaccaaaatagaaaagtttcaaag 623

                                                                       
Query: 425 tgttcatccattactaagtggaaatagagataagttaactttgtaattatgagggcagaa 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 tgttcatccattactaagtggaaatagagataaattaactttgtaattatgagggcagaa 683

                                                      
Query: 485 ttttaaaattcctttgctataagttatattctaaataactgtg 527
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttttaaaattcctttgctataagttatattctaaataactgtg 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space:   473572
Effective search space used:   473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)