BAC Information

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BAC

Clone NameMSMg01-476L18
Chromosome9 (Build37)
Map Location 98,295,266 - 98,295,814
singlet/doubletsinglet
Overlap geneNmnat3
Upstream geneClstn2, LOC667298
Downstream geneRbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L18.T7 (MSMg01no476_l18.b1)MSMg01-476L18.TJ (MSMg01no476_l18.g1)
ACCAG558255AG558256
length771777
length of high quality
(start - end)
514 (62 - 575)549 (72 - 620)
definitionCHROMAT_FILE: MSMg01no476_l18.b1 PHD_FILE: MSMg01no476_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:56 2005CHROMAT_FILE: MSMg01no476_l18.g1 PHD_FILE: MSMg01no476_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTTGTTAACCGTGAACATTCAAAACACTCCACAGGGTTTCAACATTCTGG
TTTTTCATAATTGCCTTAAAACAAACACACAGGCTAAGAATTCTCCAAAA
AAGAAGGGTTGACATTTGGTTATCATTATGCAAAAGAATGACTCTTGACC
CTGATATCATGCCATACAAAAATTAAACAGTTTATAGACATAAATATAAG
GTTAAACCATAAAACTACAAAAGAAAAAAACCCCACAGGAGAAAGGTTAG
CATTCCTCTGCTGGACATACCATTCTCTAGGATACAAAGGGCAGGAATTT
GAAAGATTGGTGAATCTGGACTTCATCAGAAGCCAAGCATCATTAGGAAG
TCCACCAGGCATTTCTTAGACTGGTCAAAAAATGTTTGTAAAACCTTGTT
CAAGAAGAAACATGTATCTATAATACATGAAAGAGCTCTTACAACTCAAG
AATAAGGAGGCAAGCAATGTGATTTAAAATATAAGGAAAGTATTTGAATA
TGCACCTCACTAAAGTAAAGAGACAGATATCACATAAATGTAAGGAAAGA
TGCTCTGTAGCGTTAGCTGAAAAAAAGACAGCCCTAGATGACTAAGGCCA
GTTCATGACTAGGACAATCCTGTGTGTTGGTCAAAAACCGTGCAACTGGA
ACATATAGAATGTGCACTTTTGGAAGCAGGCCGTTTCTTCTGAAACAAGG
AACCCGAGGTTTCTTTCCAAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGGAGAAACAAATGGAATTACCATTTT
AGTAGACTAGAAAACATTAAGGTTCTGTGTATGATTTTGAATCAGGCTAA
TGACAGATTGAGCAGATAGGAATATACATGAAGCAAAATTATCCACAAAA
GAACACAGAGAGATTTTAATAAATCCCAGAGAGAGTAAGATATGGGGGCT
CCCTACTTCCAGTAAGAAAGGTGAAAGAAACACAAATAAAGAGGCACAGA
TAATTTCCATAGAAATTATTTCTAAGAATTTTCCACATCTGATGAAAGAT
ACTAATGCACATATTAAAGACATTCCAAGGCAATACAAATAAAAGAAATT
CATATAGATAAAAGCAATATACAAAGCAACAAGAATACAGATTGCTTCCC
CTGGAATGACAGACTTATACAGTACTTCTCAACAGCAACAATACAGGACA
GGAGAACAATAACTTGATAGTATTGAAGAAAGCTAACATTTCACCCCATT
TGTTTTATACCCAGTGAAAATATCTTTCAAGGTTGTAATTTAGAATGAAG
TCACCAATTTAAGGAAATCTCAATAGGCATATTCTGTCTGATGGGTGCCG
TGTTGTTTTTATCCCCCCCGCTCCCTTTTTTATATCCCTTTTTTTCCCCC
CCCTCTTTCCTTTTTTTTACCTCTCTTTTTTCTCCTTCTCCCCTTCTTTC
TCCCCCCTTTTTTTTTCCTTTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l18.g1 MSMg01no476_l18.g1 CHROMAT_FILE:
MSMg01no476_l18.g1 PHD_FILE: MSMg01no476_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:56 2005
         (549 letters)



>mm_chr9_98295066_98296014
          Length = 949

 Score = 1031 bits (533), Expect = 0.0
 Identities = 545/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggagaaacaaatggaattaccattttagtagactagaaaacattaaggttctgtgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggagaaacaaatggaattaccattttagtagactagaaaacattaaggttctgtgta 260

                                                                       
Query: 61  tgattttgaatcaggctaatgacagattgagcagataggaatatacatgaagcaaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgattttgaatcaggctaatgacagattgagcagataggaatatacatgaagcaaaatta 320

                                                                       
Query: 121 tccacaaaagaacacagagagattttaataaatcccagagagagtaagatatgggggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccacaaaagaacacagagagattttaataaatcccagagagagtaagatatgggggctc 380

                                                                       
Query: 181 cctacttccagtaagaaaggtgaaagaaacacaaataaagaggcacagataatttccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctacttccagtaagaaaggtgaaagaaacacaaataaagaggcacagataatttccata 440

                                                                       
Query: 241 gaaattatttctaagaattttccacatctgatgaaagatactaatgcacatattaaagac 300
           ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaataataactaagaattttccacatctgatgaaagatactaatgcacatattaaagac 500

                                                                       
Query: 301 attccaaggcaatacaaataaaagaaattcatatagataaaagcaatatacaaagcaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attccaaggcaatacaaataaaagaaattcatatagataaaagcaatatacaaagcaaca 560

                                                                       
Query: 361 agaatacagattgcttcccctggaatgacagacttatacagtacttctcaacagcaacaa 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 agaatacagattgcttcccctggaatgacagacttatacagtacatctcaacagcaacaa 620

                                                                       
Query: 421 tacaggacaggagaacaataacttgatagtattgaagaaagctaacatttcaccccattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaggacaggagaacaataacttgatagtattgaagaaagctaacatttcaccccattt 680

                                                                       
Query: 481 gttttatacccagtgaaaatatctttcaaggttgtaatttagaatgaagtcaccaattta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttttatacccagtgaaaatatctttcaaggttgtaatttagaatgaagtcaccaattta 740

                    
Query: 541 aggaaatct 549
           |||||||||
Sbjct: 741 aggaaatct 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)