BAC Information

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BAC

Clone NameMSMg01-476M06
Chromosome9 (Build37)
Map Location 55,274,783 - 55,436,758
singlet/doubletdoublet
Overlap geneAI118078, Etfa, LOC546133, Isl2, Zfp291
Upstream geneDmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4
Downstream geneLOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M06.T7 (MSMg01no476_m06.b1)MSMg01-476M06.TJ (MSMg01no476_m06.g1)
ACCAG558279AG558280
length747747
length of high quality
(start - end)
534 (43 - 576)433 (74 - 506)
definitionCHROMAT_FILE: MSMg01no476_m06.b1 PHD_FILE: MSMg01no476_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:58 2005CHROMAT_FILE: MSMg01no476_m06.g1 PHD_FILE: MSMg01no476_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,436,247 - 55,436,758)(55,274,783 - 55,275,215)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCATGTCATTCCGCAATTCCTAGGAAAGGTTATGACAGTGTTTTTAGC
AATGAAGCTGTACTCCTAAGTGTCTAATTTACAGTATGCTAATAATCTGC
TGAAGGTAGCAGGCACAGTAAGGGGAAATCAGCACTCAGATTCATGGATA
GTAAAACTCTTGTCTCTGAAGTCATGCATCCTCGGAATTCTGAAAGTAGA
CTAGGAATTAGTTGTAGGGAGAACTGCCTTCTGGTTCTGTGTGAGCAGGC
AGTCAGTTTTATCCAAACCTGTGTCTCTTTTTGGAGCCTATATAATAACT
TTAGATAAATTAATATCTTTTCATGTCTATAGTTAGGGTTTGACCCCTAA
TTCTTTTGACTTTGATGGCACTAAGGGCCAACTGATAATAGCAATTTTTG
TAAAAAGTGCTCTAAATGTGCCTATAATCAAAATCCTTTTTAAAATATGT
ATCTTTATTAAGTAGCATACTACAAAGTATCTCCTTATGAAGACACAAAA
CTGTATTGTGGAGAGAACCGGACAGCTTCTGGGACGGGCAGAACCACAGA
GCCGTTGAGGCAGCAGTCTGGGCGGGCCGCATACCATCGGTCATCATTTG
GACCACATGTACCCCGTCCGCCTTGCCTGCTAGGTGACTTCCCCCTCTGT
ACCAGTTTTTTTCATCTGCCTTTCGCCATTTCCCTGTTCACTAAGAN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCGCGAAATTCCAGTGAGACTTCCCAGAGCAGCTCTAT
ATCGATTACAAGCCATCAATAATGCATCCCTTAGAGGGGCCTAGGAAGCC
ATTAGCTGGGCCTGCAGAGTCTGAGGCATGGCCTTGGAGAAAGTGGCTGC
GTGTGCCCACGGGAAGTTCCTATCAGCCTAGGCCAAAGGGCTCCCATCCC
CACAGACTTCAGGAAGATTACCTCATAGAGCTTCTGGGCCTTGTACATAG
AGAAGTGGCCCCTTATTCTTTTCATTAAAAGGCCACCATAAAAATTTATG
AGCCATATTTTCTCAAACTCTGAGACTGTTAGCCCATTTAAGGGCTGGGT
TGTTGAGGCACAGTATCTTGAGTCAGGAGTTAGGACTGTGACTGTGCCAG
GGTTAGGGGCCCATAGTAGCCCCAGGTTTGGGCTGAAGTATGACAAGGAC
CCACATCCATGTGTGACCAAGGTTAGGGCTCAGTGTATGGCCAGCAATGT
AAGCTGAGATTATACAGCTCATACTGGGTGTGTATGCAGGACCTGTCTAC
CGTCCGGATCTGTGCTCAGTGTACCTGGCCGGCCCCCCCTCTGCCCATAT
CCCGGTTTATACTTGATTCCCCCGCCGCCGCTGGATCTCGCCTCTCTCTT
CCCCCCCCCCTCGTCTATTTCGACTGCCCCCTTCTCCCTTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m06.b1 MSMg01no476_m06.b1 CHROMAT_FILE:
MSMg01no476_m06.b1 PHD_FILE: MSMg01no476_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:58 2005
         (534 letters)



>mm_chr9_55436041_55436974
          Length = 934

 Score =  920 bits (476), Expect = 0.0
 Identities = 503/512 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatgtcattccgcaattcctaggaaaggttatgacagtgtttttagcaatgaagc 66
           ||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcatgtcattttgtaattgctaggaaaggttatgacagtgtttttagcaatgaagc 659

                                                                       
Query: 67  tgtactcctaagtgtctaatttacagtatgctaataatctgctgaaggtagcaggcacag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tgtactcctaagtgtctaatttacagtatgctaataatctgctgaaggtagcaggcacag 599

                                                                       
Query: 127 taaggggaaatcagcactcagattcatggatagtaaaactcttgtctctgaagtcatgca 186
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 598 taaggggaaatcagcactcagattcatagatagtaaaactcttgtctctgaagtcatgca 539

                                                                       
Query: 187 tcctcggaattctgaaagtagactaggaattagttgtagggagaactgccttctggttct 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 538 tcctcggaattctgaaagtagactaggaattagttgtagggagaactgccttctggctct 479

                                                                       
Query: 247 gtgtgagcaggcagtcagttttatccaaacctgtgtctctttttggagcctatataataa 306
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 478 gtgtgagcaggcagtcagttttatccaaacctgggtctctttttggagcctatataataa 419

                                                                       
Query: 307 ctttagataaattaatatcttttcatgtctatagttagggtttgacccctaattcttttg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctttagataaattaatatcttttcatgtctatagttagggtttgacccctaattcttttg 359

                                                                       
Query: 367 actttgatggcactaagggccaactgataatagcaatttttgtaaaaagtgctctaaatg 426
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 actttgatggcacttagggccaactgataatagcaatttttgtaaaaagtgctctaaatg 299

                                                                       
Query: 427 tgcctataatcaaaatcctttttaaaatatgtatctttattaagtagcatactacaaagt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgcctataatcaaaatcctttttaaaatatgtatctttattaagtagcatactacaaagt 239

                                           
Query: 487 atctccttatgaagacacaaaactgtattgtg 518
           |||||||||||| |||||||||||||||||||
Sbjct: 238 atctccttatgacgacacaaaactgtattgtg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no476_m06.g1 MSMg01no476_m06.g1 CHROMAT_FILE:
MSMg01no476_m06.g1 PHD_FILE: MSMg01no476_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:59 2005
         (433 letters)



>mm_chr9_55274583_55275415
          Length = 833

 Score =  791 bits (409), Expect = 0.0
 Identities = 427/433 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgagacttcccagagcagctctatatcgattacaagccatcaataatgcatccctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgagacttcccagagcagctctatatcgattacaagccatcaataatgcatccctta 260

                                                                       
Query: 61  gaggggcctaggaagccattagctgggcctgcagagtctgaggcatggccttggagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggggcctaggaagccattagctgggcctgcagagtctgaggcatggccttggagaaag 320

                                                                       
Query: 121 tggctgcgtgtgcccacgggaagttcctatcagcctaggccaaagggctcccatccccac 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctgcgtgtgcccgcgggaagttcctatcagcctaggccaaagggctcccatccccac 380

                                                                       
Query: 181 agacttcaggaagattacctcatagagcttctgggccttgtacatagagaagtggcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacttcaggaagattacctcatagagcttctgggccttgtacatagagaagtggcccct 440

                                                                       
Query: 241 tattcttttcattaaaaggccaccataaaaatttatgagccatattttctcaaactctga 300
           |||||  | ||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattccctgcaagaaaaggccaccataaaaatttatgagccatattttctcaaactctga 500

                                                                       
Query: 301 gactgttagcccatttaagggctgggttgttgaggcacagtatcttgagtcaggagttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactgttagcccatttaagggctgggttgttgaggcacagtatcttgagtcaggagttag 560

                                                                       
Query: 361 gactgtgactgtgccagggttaggggcccatagtagccccaggtttgggctgaagtatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactgtgactgtgccagggttaggggcccatagtagccccaggtttgggctgaagtatga 620

                        
Query: 421 caaggacccacat 433
           |||||||||||||
Sbjct: 621 caaggacccacat 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)