BAC Information

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BAC

Clone NameMSMg01-476P17
Chromosome9 (Build37)
Map Location 84,198,393 - 84,288,174
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
Downstream geneEG666669, LOC666672, BC023892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476P17.T7 (MSMg01no476_p17.b1)MSMg01-476P17.TJ (MSMg01no476_p17.g1)
ACCAG558443AG558444
length768766
length of high quality
(start - end)
246 (71 - 316)328 (325 - 652)
definitionCHROMAT_FILE: MSMg01no476_p17.b1 PHD_FILE: MSMg01no476_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:16 2005CHROMAT_FILE: MSMg01no476_p17.g1 PHD_FILE: MSMg01no476_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,198,393 - 84,198,638)(84,287,847 - 84,288,174)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAAGCATCCGCGGAATTC
ATTGTGCTTACACATAATCCTATGCCTTCTGGAAACGCCTTCTGTCTGTT
CTCTTTGTCTTTATTCATGCAAAGCATGTAGTCTATTGTCTAAGACTATG
GGTTAGTTCAAATTCTCACAGGTTTAAAAATGTGGGGTGAGCTGGCGAGA
TGGCTCAGTGGTTAAGAGCGGCGACTGCTCTTCCAAAGGTCCCAAGTTCT
TATCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAAATTTGATG
CCCTTTTCTGGAGTATCCTAGTTCAGCTACAGTGTACTTACATATAATAA
ATAAATAAATCTTTAAAAAAATGTGGGGTGTAACAGAGACAAAGTTTGGA
GCTGAGACAAAAGGATGGTCTATCTAGAGACTGCCATATCCAAGGATCCA
TCCCATAATTAGCCTCCAAACGATGACACCATTGCATACACTAGCAAGCC
TTTGTTGCAAGGACGGTGATATAGCTGTCCCTTGTGAGACTAGGCCGGTG
TCCAGCAAACACAGAAGAGGATGCTCACAGTCTACTATTGTACGCATCAC
AGGGCCCCCATCGGAGGAGTCAGAGAACGTATCCCCGGAGCTATAGAGAT
TTGTTTTTTTATCTGTGGAACCACATTATGACCTAACTAGCACCCCATAG
TTTTTGATTTTACCTTCCATGCTTCATAAGATGACTTACTTCGCTTTCTC
TGTCATTATATCTCTTTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGTGTCAGTTCTCATAAAAAAAAAGGTATT
GGAACTCAGCCATGTTCATTCATGAACTTTCTGCTGCTCTTGTGCTTTAT
TGGCAGAGTTGAACATTTGAGACAGACACCATATGGCCCACAGAAAAATA
AAATATTTGTCATCTAGCCTTTGACAAAAATGTTGAATTCCTAATGTTAG
TAATGGAGGCCAAATCAGGCAATGGAACAAGATAGAAAACAGAAGGACCC
CAGATACTCCAACAGTTCTTATGATAGAGTTACTATTCAATCCTTGATTG
ACGCCATGGGATTTACATGTAAAAGTAAAGAAGACCCCATTCTATAATGT
CATAGGCCTTCAGGTTTTCCTTTCTTCATCCTATCTGCCATGTGTCTCTC
AAGTCCATACCATAGAAGGGCAACATTTCCTCCATCTTTCACCTCTGCCA
TAGACTCCTAAAATAATAGCAGGATATATGCAATCCAAAGCTTGAAACAT
GACATGTCCGTATTATTCTACCATTTAGAGCCATGAGAAGAACATAAATA
ATACTTATCCATCGAGAGAGGGGAGGGACGGGAGAGACAGAGAGAGACTT
GAATTTCTCTCGCTTTCACAGCTACAGTTGAAAAGGAACCAATCCCAGTA
CACACTGATATTCATTCTTAGTTCATCCCCATCAGCCCACGGAACAAGTG
TTTGTCTGATCTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_p17.b1 MSMg01no476_p17.b1 CHROMAT_FILE:
MSMg01no476_p17.b1 PHD_FILE: MSMg01no476_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:16 2005
         (246 letters)



>mm_chr9_84198193_84198838
          Length = 646

 Score =  398 bits (206), Expect = e-115
 Identities = 236/246 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgccttctggaaacgccttctgtctgttctctttgtctttattcatgcaaagcatgta 60
           |||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 201 tatgccttttgtaaacgccttctgtctgttctctttgtcttttttcatggaaagcatgta 260

                                                                       
Query: 61  gtctattgtctaagactatgggttagttcaaattctcacaggtttaaaaatgtggggtga 120
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 261 gtctattgtctaagactatgggttagttcaaattcttgcaggtttaaaaatgtggggtga 320

                                                                       
Query: 121 gctggcgagatggctcagtggttaagagcggcgactgctcttccaaaggtcccaagttct 180
           |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| 
Sbjct: 321 gctggcgagatggctcagtggttaagagcgccgactgctcttccgaaggtcccaagttca 380

                                                                       
Query: 181 tatccagcaaccacatggtggctcacaaccatctgtaatgaaatttgatgcccttttctg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatccagcaaccacatggtggctcacaaccatctgtaatgaaatttgatgcccttttctg 440

                 
Query: 241 gagtat 246
           ||||||
Sbjct: 441 gagtat 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_p17.g1 MSMg01no476_p17.g1 CHROMAT_FILE:
MSMg01no476_p17.g1 PHD_FILE: MSMg01no476_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:16 2005
         (328 letters)



>mm_chr9_84287647_84288374
          Length = 728

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagttactattcaatccttgattgacgccatgggatttacatgtaaaagtaaagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tagagttactattcaatccttgattgacgccatgggatttacatgtaaaagtaaagaaga 469

                                                                       
Query: 61  ccccattctataatgtcataggccttcaggttttcctttcttcatcctatctgccatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ccccattctataatgtcataggccttcaggttttcctttcttcatcctatctgccatgtg 409

                                                                       
Query: 121 tctctcaagtccataccatagaagggcaacatttcctccatctttcacctctgccataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 408 tctctcaagtccataccatagaagggcaacatttcctccatctttcacctctgacataga 349

                                                                       
Query: 181 ctcctaaaataatagcaggatatatgcaatccaaagcttgaaacatgacatgtccgtatt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctcctaaaataatagcaggatttatgcaatccaaagcttgaaacatgacatgtccgtatt 289

                                                                       
Query: 241 attctaccatttagagccatgagaagaacataaataatacttatccatcgagagagggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 attctaccatttagagccatgagaagaacataaataatacttatccatcgagagagggga 229

                                       
Query: 301 gggacgggagagacagagagagacttga 328
           ||||||||||||||||||||||||||||
Sbjct: 228 gggacgggagagacagagagagacttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)