BAC Information

Click to search

BAC

Clone NameMSMg01-477C05
Chromosome9 (Build37)
Map Location 73,531,856 - 73,712,085
singlet/doubletdoublet
Overlap geneUnc13c
Upstream geneNedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477C05.T7 (MSMg01no477_c05.b1)MSMg01-477C05.TJ (MSMg01no477_c05.g1)
ACCAG558560AG558561
length763751
length of high quality
(start - end)
367 (80 - 446)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no477_c05.b1 PHD_FILE: MSMg01no477_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:29 2005CHROMAT_FILE: MSMg01no477_c05.g1 PHD_FILE: MSMg01no477_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,711,773 - 73,712,085)(73,531,856 - 73,532,096)
sequence
CTTCGTCTAAAATTTGGGGCGCTAATCNACTCACTATTTCCAGAGATCCG
CGGAATTCCAAGCCTATGCTCTGCTCAAGGACTTTCTAGGACTGCTGGAA
CACTGGTGAAGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTA
TAATAGGATAATACTAAAAGAGAGCACGTGGATCCATACACCAGACTAAT
GCGGGATTGGAATATTTATGGCGTTAGAGAGAACGCCAGACTCCAGGAGT
GAGTTTCTGTGAAACTCTTCTGCCTCATGAGTAGCTTCCAAGCCTCTCGG
CTTGTCAAGCTGACTCGACCAGAGTGTGTAGCATCCATAGCCATGTCCTG
GAACACTTGGTAACCCCACTCCAGCCTTTTCCTAAGTTATGCCTTTGCCT
CTATTCCCAGACTCCTTCTGTTCCTGTGAAAGCCTATCTTCTTCTCTACA
TGGTTCATAGACTTGCCAGCAAACCTTGGGAATATTACTTTTCTCTCTTA
TGGATGAACTGGGTTGACCATATCTACTTGGATGAACTCCATGTAAAATT
ATAAGCTGTGACCAATAAGGTGCCTTGAACAAAGACAGTTCATTGTTTCA
AACCAGCAGCTCACTAATCTGAAAGATGGGTGTCTAATATTCCCATTTCC
TCGGTCTTCCCCTTAATAAGGGATGTAATGTCTTTGTGTTTGCTCGCAGG
AATTCCTAGTTTGGTTGCCTTGTTTTTAACCCTTGCGCATATATTATGCA
TGGGAAATTGGGG
NCCCCGATGAAGTGGGAGGCCTGGCGGCCGCCTTTTCAAAACAGGTAGGT
GAACTATAGAAGTACAAAAGAAATTCCTGACCAGTATGTCTGTTGGTTTA
TGTGGAGCTCTGTACCGTATGCTAGGCCAACTACATCTTCATTGGTCAGA
GGACTTTATCAAATAAAACTCGAATTCTCACAAAGTAGATGCAAGTTAAA
AAGTCATCTCCCAGAAACTATAATTCTTCTACACAAAAAAGAAGCAACAT
CATTAGATAGGTATTTTTAAGAGATTATTTTGGGTGTAAGATTTTAGGAG
GATGTGTTGGAGAAAGGTTAATAATTAAAAGGAGTCCAATAGGAAGAAGC
TATCTGAAGTTCTTTTCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGCGCCCCTTCTTCTTTTTCTTCTTCGACTTGTTTCTCCTG
CGCTCCCCATTCTTCTTATTGCCGCTTATCCCTGTATTGTTTCTGGCAAT
ATCATTCCTTTTTTTTATTGCTTTCCTCTGTCCCCTATTATTTTTCCCGG
GGGGGTGTGTGTCCGTCCCATTCTACTTTTTACTCCTCGCTTCACGCCTA
CTTTCCTCCTCCCATCTTTCTCTCCCTCCCGCAACAGCTATATTTATTTT
TTCTTTTCCGTCCTTTTTTACTTTTTTTCCTTGGTTTTCCGTCCGCCCCC
CTCCCCTTTTCTTATTCTTTGCACACCGTTCACTTGTCCGACACTTGTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_c05.b1 MSMg01no477_c05.b1 CHROMAT_FILE:
MSMg01no477_c05.b1 PHD_FILE: MSMg01no477_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:29 2005
         (367 letters)



>mm_chr9_73711319_73712085
          Length = 767

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 55  atcttaaaaggcacttataataggataatactaaaagagagcacgtggatccatacacca 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 atcttaaaaggcacttataataggataatactaaaagagagcacgtggatccatacacca 708

                                                                       
Query: 115 gactaatgcgggattggaatatttatggcgttagagagaacgccagactccaggagtgag 174
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 707 gactaatgcgggattggaatatttacggcgttagagagaacgccagactccaggagtgag 648

                                                                       
Query: 175 tttctgtgaaactcttctgcctcatgagtagcttccaagcctctcggcttgtcaagctga 234
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 647 tttctgtgaaactcttctgcctcatgcgtagcttccaagcctctcggcttgtcaagctga 588

                                                                       
Query: 235 ctcgaccagagtgtgtagcatccatagccatgtcctggaacacttggtaaccccactcca 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctcgaccagagtgtgtagcatccatagccatgtcctggaacacttggtaaccccactcca 528

                                                                       
Query: 295 gccttttcctaagttatgcctttgcctctattcccagactccttctgttcctgtgaaagc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gccttttcctaagttatgcctttgcctctattcccagactccttctgttcctgtgaaagc 468

                        
Query: 355 ctatcttcttctc 367
           |||||||||||||
Sbjct: 467 ctatcttcttctc 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no477_c05.g1 MSMg01no477_c05.g1 CHROMAT_FILE:
MSMg01no477_c05.g1 PHD_FILE: MSMg01no477_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:29 2005
         (243 letters)



>mm_chr9_73531656_73532298
          Length = 643

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaccagtatgtctgttggtttatgtggagctctgtaccgtatgctaggccaactacat 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctgaccagtatgtctgttggtttatgtggagctctgtaccgtatgttaggccaactacat 260

                                                                       
Query: 61  cttcattggtcagaggactttatcaaataaaactcgaattctcacaaagtagatgcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcattggtcagaggactttatcaaataaaactcgaattctcacaaagtagatgcaagt 320

                                                                       
Query: 121 taaaaagtcatctcccagaaactataattcttctacacaaaaaagaagcaacatcattag 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 321 taaaaagtcatctcccagaaactataattcctctacacaaaaaagaagcaacatcatcag 380

                                                                       
Query: 181 ataggtatttttaagagattattttgggtgtaagattttaggaggatgtgttggagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataggtatttttaagagattattttgggtgtaagattttaggaggatgtgttggagaaag 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)