Query= MSMg01no477_c19.b1 MSMg01no477_c19.b1 CHROMAT_FILE:
MSMg01no477_c19.b1 PHD_FILE: MSMg01no477_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:32 2005
(549 letters)
>mm_chr9_66728415_66729363
Length = 949
Score = 992 bits (513), Expect = 0.0
Identities = 538/551 (97%), Gaps = 9/551 (1%)
Strand = Plus / Minus
Query: 4 gaattcactttatctttc-----ttatactgttgtcttcttctgttcatagctgattcga 58
|||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaattcacttta----tcaaagattatactgttgtcttcttctgttcatagctgattcga 713
Query: 59 gtaattggataaattataggatggcaaacttggaattatctgagctaatcacagctaggg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gtaattggataaattataggatggcaaacttggaattatctgagctaatcacagctaggg 653
Query: 119 atagactggacgaatagtgtctacagatgatgtctgcgtgcatgggtcctttcatacaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 atagactggacgaatagtgtctacagatgatgtctgcgtgcatgggtcctttcatacaga 593
Query: 179 agccacaaaccacagattctgcagggaagctggtgcttagccttccctttgtcttcacac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agccacaaaccacagattctgcagggaagctggtgcttagccttccctttgtcttcacac 533
Query: 239 attctcttgcaggtggcagcaggtaaactggaagtataggattagggagtgggagacaag 298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 532 attctcttgcaggtggcagcaggtaaactggaagtataggattaggaagtgggagacaag 473
Query: 299 tttgggcagtcgatagatagacaatgtatgtagctacagctgccatagttcctgggaaat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tttgggcagtcgatagatagacaatgtatgtagctacagctgccatagttcctgggaaat 413
Query: 359 agctgctgctcttttacttctgattaattctatttctttcccatttccactcttatcagc 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 412 agctgctgctcttttacttctgattaattctatttctttcccattcccactcttaccagc 353
Query: 419 tatgcttctggccagctcacttccctgcggagtcttgataacaacagaaatactaacaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tatgcttctggccagctcacttccctgcggagtcttgataacaacagaaatactaacaaa 293
Query: 479 tggagaactgactccccaaatgcagtcttctccttcacacagagtgagtgagctggttct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tggagaactgactccccaaatgcagtcttctccttcacacagagtgagtgagctggttct 233
Query: 539 ttggtatggct 549
|||| ||||||
Sbjct: 232 ttggcatggct 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_c19.g1 MSMg01no477_c19.g1 CHROMAT_FILE:
MSMg01no477_c19.g1 PHD_FILE: MSMg01no477_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:32 2005
(640 letters)
>mm_chr9_66556192_66557232
Length = 1041
Score = 1071 bits (554), Expect = 0.0
Identities = 610/640 (95%), Gaps = 22/640 (3%)
Strand = Plus / Plus
Query: 4 ggccaagtaactgagccagcctcaccatggtaactggaggcagtgatgggctgagagttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggccaagtaactgagccagcctcaccatggtaactggaggcagtgatgggctgagagttt 263
Query: 64 ccacactggaatccaggaatccacgaatac-gttttcattttcattagaaaattaaggct 122
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 ccacactggaatccaggaatccacgaatacagttttcattttcattagaaaattaaggct 323
Query: 123 gagattctccaaacttccatttattccaagctggctcaggagcgatgagagagagagaga 182
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagattctccaaacttccttttattccaagctggctcaggagcgatgagagagagagaga 383
Query: 183 gagagagagagagaga--gagacagagacagagacagagacagagacagacagacacaca 240
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct: 384 gagagagagagagagacagagacagagacagagacagagacagagacaga--gacagaca 441
Query: 241 cacacacacactcacacacacacacacagatttatttgatttttttttccaaagcacttt 300
||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 442 cacacacacac----------------agatttatttgatttttttt-ccaaagcacttt 484
Query: 301 cacacatatgggcccaaacctgtagggggttagacattcttgttccaactaagaggtcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacacatatgggcccaaacctgtagggggttagacattcttgttccaactaagaggtcag 544
Query: 361 aaaacagaggcatacacagggtgagaggcttgtgaaggttctagggctggttcctggcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaaacagaggcatacacagggtgagaggcttgtgaaggttctagggctggttcctggcag 604
Query: 421 agccaggagtttggcactgtttcctccgggtcacactgttctcttactgatcctgcctga 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 605 agccaggagtttggcactgtttcctccgggtcacactgtcctcttactgatcctgcctga 664
Query: 481 aactgagcagagtagagctgcagttcacacagaggttatgaatccatgccctcgctgcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aactgagcagagtagagctgcagttcacacagaggttatgaatccatgccctcgctgcat 724
Query: 541 ggcgtgaataaagctgtaaaactcactgcgttttcacatccccatcaatgagcctgcaca 600
||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 725 ggcatgaagaaagctgtaaaactcgctgcgttttcacatccccatcaatgagcctgcaca 784
Query: 601 agtttggacataaaagtctgcccagtgacagccagcttag 640
|||||||||||| ||||||||||||||| |||||||||||
Sbjct: 785 agtttggacatagaagtctgcccagtgagagccagcttag 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1041
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1031
Effective search space: 649530
Effective search space used: 649530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
