Query= MSMg01no477_f11.b1 MSMg01no477_f11.b1 CHROMAT_FILE:
MSMg01no477_f11.b1 PHD_FILE: MSMg01no477_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:45 2005
(690 letters)
>mm_chr9_36526028_36527116
Length = 1089
Score = 1187 bits (614), Expect = 0.0
Identities = 661/686 (96%), Gaps = 19/686 (2%)
Strand = Plus / Plus
Query: 5 gaattcttacctgtcacgtattgggccctgggtttaatctccaacaaccccaaaggaagt 64
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcctgtcaggtattgggccctgggtttaatctccaacaaccccaaaggaagt 264
Query: 65 gttgagatttttttaatttaatggttatacttcatgaaaataaacctctgggttataagt 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgaga-ttttttaatttaatggttatacttcatgaaaataaacctctgggttataagt 323
Query: 125 ttcaaggtagttaagaataagatataaagtataatgggttaaaagtttatttcccactac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcaaggtagttaagaataagatataaagtataatgggttaaaagtttatttcccactac 383
Query: 185 agtttataccaaaatctcaacccccaagataatgaatgtgagagcttatttggaggatct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtttataccaaaatctcaacccccaagataatgaatgtgagagcttatttggaggatct 443
Query: 245 agcagggaatcaaagctactcaatacaccgcctgaaggttaaccctcttctatccaggaa 304
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 444 agcagggaatcaaagctactcaatacacc----gaaggctaaccctcttctatccaggaa 499
Query: 305 aagttgtcctcttcaactgagcccacatcagcctcaccaggcaaatcaaccaaatcaaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagttgtcctcttcaactgagcccacatcagcctcaccaggcaaatcaaccaaatcaaac 559
Query: 365 caagccatcaatgaagggacactg-ttgcattcagatcactcactcccattcccagtgtg 423
|||| || ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 560 caag------at-------cactgtttgcagccagatcactcactcccattcccagtgtg 606
Query: 424 atgattctggaggtggggcctttgtggggtgactgggtcatgagtatgaaagccctcaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atgattctggaggtggggcctttgtggggtgactgggtcatgagtatgaaagccctcaaa 666
Query: 484 agtgggatttgggtccttatgaagacactaaagagtctgtctctcctctcagtaaggtgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agtgggatttgggtccttatgaagacactaaagagtctgtctctcctctcagtaaggtgg 726
Query: 544 tcaactgtaaggcaggaagagagagggcccccagaaaatgaccatgctggcaacttcacc 603
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 727 tcaactgtaaggcaggaagagagagggccctcagaaaatgaccatgctggcaacttcacc 786
Query: 604 acccagacttcaagccttcaagttctatatgaaataaatctgtatataacacactcaccg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 acccagacttcaagccttcaagttctatatgaaataaatctgtatataacacactcaccg 846
Query: 664 aacggtacttagtacctatcgcccta 689
||||||||||||||||||||||||||
Sbjct: 847 aacggtacttagtacctatcgcccta 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1089
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1079
Effective search space: 733720
Effective search space used: 733720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_f11.g1 MSMg01no477_f11.g1 CHROMAT_FILE:
MSMg01no477_f11.g1 PHD_FILE: MSMg01no477_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:45 2005
(406 letters)
>mm_chr9_36718085_36718890
Length = 806
Score = 600 bits (310), Expect = e-176
Identities = 321/326 (98%), Gaps = 3/326 (0%)
Strand = Plus / Minus
Query: 1 atggtgagcaccaagacctgatcatgatgggttggaacaaatttaagtcaaaatctcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atggtgagcaccaagacctgatcatgatgggttggaacaaatttaagtcaaaatctcatg 438
Query: 61 gtttccttcctcctactcccacacacattccctctagcccctcaacacacacattcaaga 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtttccttcctcctcctcccacacacattccctctagcccctcaacacacacattcaaga 378
Query: 121 ctgagtaaagccttgtccctcctcctaattgcttcccaccaaaagctctgcttttccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctgagtaaagccttgtccctcctcctaattgcttcccaccaaaagctctgcttttccttc 318
Query: 181 tggacatcatctcttacctcacccactcctctcctacaaggggagcagacatacattctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tggacatcatctcttacctcacccactcctctcctacaaggggagcagacatacattctg 258
Query: 241 ctactaccccaagagtcttcacatgagagtgccaagcaactgggaaccctgcttgccgcc 300
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 257 ctactaccccaagagtcttcacatgagagtgccaagcaactgggacccctgcttgcc--- 201
Query: 301 ttcttcttcttcttcttcttcttctt 326
||||||||||||||||||||||||||
Sbjct: 200 ttcttcttcttcttcttcttcttctt 175
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
