BAC Information

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BAC

Clone NameMSMg01-478A17
Chromosome9 (Build37)
Map Location 24,116,143 - 24,116,814
singlet/doubletsinglet
Overlap geneNpsr1
Upstream geneBmper, LOC100040866, LOC100040878, LOC100040893
Downstream geneDpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478A17.T7 (MSMg01no478_a17.b1)MSMg01-478A17.TJ (MSMg01no478_a17.g1)
ACCAG559253AG559254
length1,119738
length of high quality
(start - end)		---673 (63 - 735)
definitionCHROMAT_FILE: MSMg01no478_a17.b1 PHD_FILE: MSMg01no478_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:40 2005CHROMAT_FILE: MSMg01no478_a17.g1 PHD_FILE: MSMg01no478_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTTAATTAACGAANCTCANCTTATACAGAGTAGCAGAGATNCCGNNNC
GGAANNNTCTTTTGTTTCACAAATCATGACGACGCCCATTTNTNNTTAAT
GGGGNGNNTTATTTGGAAATTTTCNNTGAAGNNTCCACCTTTTTCTTGAC
GCTTCTTNNNTATATATNNGTTGGAANNNATTAGTCNNNCCCTATNCTNG
AAATTTANNGATANNNGGTAAAAGATCNNNCTTTCCNNCAATCTNNGTTG
GGTGGGTCCCTTTTTTGTCTTATTGACNGTGTCTTTTGNCTTGCAAAAAC
TTNNGAGTTTCATANGTCCNATTNNGTCATCTCGATCTACAAGCAGCATG
TGTCTGTCNGATTTTCCTTGACATACTCAGCTTCCCACTTCCCTCTANNT
CNGCCTGGTTTATGATCTGCCCCTATTACTAAANAGAANNTGCATCATTC
CTACCCNTGCCCATGAAACGTTCTCCGAGTACCTGCACNGCAAGGGTTNG
CTTTTTGCTTGCTCATCACNACCAAAAACCNAGAGGTGTTTGGTCTACAA
CCCATTCGTCTAATTAAGAGGGCCAATTTTAATCTAAGCTCCTTGGGCCC
CCTATCCGCGTCAAAAGACCTTTTTAANNGCCCGTATCTTTTAATACATC
CTAGTTCTCGTGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGG
GGGGGGGGGGGTGTGGCCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGNGGGGGGGGGGGGGGGGGGGNNCCTTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGNGGNGNTTGGGGGGGGGGGGA
GGCTAAGACTANAANNAAANAAAANAAGANAAAAAAAANANNNCCNNGGN
NGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGANGGGGGGGGGGGGTCTTANAAAAAANAANAA
NGGGGNTNAAAATTNTNTT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGATTGAGTCTCATTGAACTGGAACAATGGCCCATATT
TGGAGTTAAACAGAAGCATACAGAGTCAATTTTGTTCTCAAGCCTTTAGG
TTCAGACCTGGACTTCTATTTACTTTAGTAAGCTTGGGTTTCCTACTCTA
TCATGGAGCTTGAGTTTTGTTTGCCAACTCAGAAAGTCAGGTAAGTGACA
GTAAAGCAGCTTGCATTTGTATATTTCCTTCAAAACATCTGTATTGGCTG
TCACTTGTAGCTGCAGAGGCATAGGCATGTGATGTCTTTATTTCTTTTCT
AGTGCAGTTGTGCCTATACTGTTATATATGAATTTGATATTGGTCTCTTA
TATATTCTTTTTATTTTACTCTTACTTTAGGTGATTAATAAAGCAATATG
CTAACTTAAAAAAACCATAAAAGATACTTATCATTTCATGATGGTAAATG
AGCATTACAAAAGTATTTGTTATAGATTGTGCTCTTTATTCAACAGTATG
GTGACCCACTCGTGGGCACCCGATTGTACACTGATCAGACTTTACATGAC
TATGAATGTAATTTCTGATTGAACAGGGATACAGCAGCTTAAAAATGCAT
GTTTATGCATTCATTTACTTTTTGATCTTCCAGACAATGAGGGTTTGTGA
TTCTGGTGTGAAGGCAAGACAAGGAATCTCCGGTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_a17.g1 MSMg01no478_a17.g1 CHROMAT_FILE:
MSMg01no478_a17.g1 PHD_FILE: MSMg01no478_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:40 2005
         (673 letters)



>mm_chr9_24115947_24117018
          Length = 1072

 Score = 1180 bits (610), Expect = 0.0
 Identities = 658/674 (97%), Gaps = 3/674 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattgagtctcattgaactggaacaatggcccatatttggagttaaacagaagcataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 868 tgattgagtctcattgaactggaacaatggcccatatttggagttaaacagaaacataca 809

                                                                       
Query: 61  gagtcaattttgttctcaagcctttaggttcagacctggacttctatttactttagtaag 120
           || | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 808 gaataaattttgttctcaagcctttaggttcagacctggacttctatttactttagcaag 749

                                                                       
Query: 121 cttgggtttcctactctatcatggagcttgagttttgtttgccaactcagaaagtcaggt 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 748 cttgggtttcctactctatcatggagcttgagttctgtttgccaactcagaaagtcaggt 689

                                                                       
Query: 181 aagtgacagtaaagcagcttgcatttgtatatttccttcaaaacatctgtattggctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aagtgacagtaaagcagcttgcatttgtatatttccttcaaaacatctgtattggctgtc 629

                                                                       
Query: 241 acttgtagctgcagaggcataggcatgtgatgtctttatttcttttctagtgcagttgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acttgtagctgcagaggcataggcatgtgatgtctttatttcttttctagtgcagttgtg 569

                                                                       
Query: 301 cctatactgttatatatgaatttgatattggtctcttatatattctttttattttactct 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 568 cctatactgttatatatgaatttgatattggcctcttatatattctttttattttactct 509

                                                                       
Query: 361 tactttaggtgattaataaagcaatatgctaacttaaaaaaaccataaaagatacttatc 420
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 508 tactttaggtgattaataaagcaatatgctaactt-aaaaaaccataaaagatacttacc 450

                                                                       
Query: 421 atttcatgatggtaaatgagcattacaaaagtatttgttatagattgtgctctttattca 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atttcatgatggtaaatgggcattacaaaagtatttgttatagattgtgctctttattca 390

                                                                       
Query: 481 acagtatggtgacccactcgtgggcacccgattgtacactgatcagactttacatgacta 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 389 acagtatggtgacccacccgtgggcacccgattgtacactgatcagactttacgtgacta 330

                                                                       
Query: 541 tgaatgtaatttctgattgaacagggatacagcagcttaaaaatgcatgtttatgcattc 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgaatataatttctgattgaacagggatacagcagcttaaaaatgcatgtttatgcattc 270

                                                                       
Query: 601 atttactttttgatcttccagacaatgagg-gtttgtgattctggtgtgaaggcaagaca 659
           ||||||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||
Sbjct: 269 atttactttttcatcttccagacaatg-ggtgtttgtgattttggtgtgaaggcaagaca 211

                         
Query: 660 aggaatctccggtg 673
           ||||||||||||||
Sbjct: 210 aggaatctccggtg 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space:   704106
Effective search space used:   704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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