Query= MSMg01no478_f03.b1 MSMg01no478_f03.b1 CHROMAT_FILE:
MSMg01no478_f03.b1 PHD_FILE: MSMg01no478_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:01 2005
(620 letters)
>mm_chr9_119327714_119328731
Length = 1018
Score = 1064 bits (550), Expect = 0.0
Identities = 610/652 (93%), Gaps = 37/652 (5%)
Strand = Plus / Plus
Query: 1 ctcaggtccttggggcctgtttggctattctggtgtagttctaggatcagctagagagtt 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 172 ctcaggtccttggggcctgtttggctattctgatgtagttctaggatcagctagagggtt 231
Query: 61 cgctggtttgctggcttccatcctggcctgacttgtcattctgaattttttgtgatcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 cgctggtttgctggcttccatcctggcctgacttgtcattctgaattttttgtgatcacc 291
Query: 121 cagaagaacatacctatctatcaaccgtgtctctgtttggaacgtggagttttgttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cagaagaacatacctatctatcaaccgtgtctctgtttggaacgtggagttttgttttct 351
Query: 181 gttttactcctggttttatacctggttttggtggcatctaccctccaggacattaaagaa 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 352 gttttactcctggttttatacctggttttggtggcatcttccctccaggacattaaagaa 411
Query: 241 atatttatttttaattgtgtgagtctgtgcttgagtcctttctaagagcagtgcttgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atatttatttttaattgtgtgagtctgtgcttgagtcctttctaagagcagtgcttgctc 471
Query: 301 ttaaagttggagctctccttccagctcttcaatactatttatttgtttgtttatttagag 360
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 472 ttaaagttggagctctctttccagcacttcaatactatttatttgtttgtttatttagag 531
Query: 361 acagggtctcacagggtctttctgtgtagccctggttgctctagaactca---------- 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 acagggtctcacagggtctttctgtgtagccctggttgctctagaactcactatgtaaac 591
Query: 411 -------------------tagagatccagttgcctctgtctctgtctccttagcactgg 451
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 caggctggcctagaactcgtagagatccagttgcctctgtctctgtctccttagcactgg 651
Query: 452 gtgggattaaagatctgtgccactacaaccaggtgtcagtacattcagataaagggcaga 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gtgggattaaagatctgtgccactacaaccaggtgtcagtacattcagataaagggcaga 711
Query: 512 tggagggagattctggttttttgttttcttttttttt---cttttttaagatttattaat 568
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 712 tggagggagattctggttttttgttttcttttttttttttcttttttaagatttattaat 771
Query: 569 tttgctctctctccctgcccctccccacccccttttccgctgccaccttgcc 620
||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 772 tttgctctctc--cctgcccc---ccacccccttttccgctgccaccttgcc 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1018
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1008
Effective search space: 614880
Effective search space used: 614880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_f03.g1 MSMg01no478_f03.g1 CHROMAT_FILE:
MSMg01no478_f03.g1 PHD_FILE: MSMg01no478_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:01 2005
(580 letters)
>mm_chr9_119524062_119525041
Length = 980
Score = 1006 bits (520), Expect = 0.0
Identities = 565/580 (97%)
Strand = Plus / Minus
Query: 1 caggcaacatggtctgtgttctggccagcatttgtaacccgataccacccgctcagccac 60
||||||||||||||||||||||||||||||||||||||| ||||||||| || |||| ||
Sbjct: 780 caggcaacatggtctgtgttctggccagcatttgtaacctgataccacctgcacagctac 721
Query: 61 ataagcctgatcctccctaatgcctggaaccaagaaggaaacgcaagggggatttttcct 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 720 ataagcctgatcctccctaatgcctggaaccaaaaaggaaacgcaagggggatttttcct 661
Query: 121 actttatctaatattactggaaattttagggtacaagcctggctctggcagacctaacaa 180
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 accttatctgatattactggaaattttagggtacaagcctggctctggcagacctaacaa 601
Query: 181 gtgggactctaactcccatcctcaaagtgctaagtagagagacaagtaagactggaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gtgggactctaactcccatcctcaaagtgctaagtagagagacaagtaagactggaaacc 541
Query: 241 agagagaggagattattcaacatggccacaaataaagagaaagaaataaagagatcacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agagagaggagattattcaacatggccacaaataaagagaaagaaataaagagatcacag 481
Query: 301 atgcccaagtctatcctctaagtcctgatttgagttttaggttgaaatagacagtgggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atgcccaagtctatcctctaagtcctgatttgagttttaggttgaaatagacagtgggag 421
Query: 361 atatgcataggaagccctagtcaagtatggtcctgcctgtcactgaccggtcaataactc 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 420 atatgcataggaagccctggtcaagtatggtcctgcctgtcactgaccggtcactaactt 361
Query: 421 acttccagtctatcctgcaaactgaccagttgccaaaactgcaaaaaatctcttcccggg 480
||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct: 360 acttccagtctatcctgcagcctgaccggttgccaaaactgcaaaaaatctcttcctggg 301
Query: 481 agacaagctcccctctggctggcacaggactttgctcttctattccttcacccagaatga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 300 agacaagctcccctctggctggcacaggactttgctcttctattccttcacccagcatga 241
Query: 541 gactcctagggaaattcagttgctcagggtctgtgtacca 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gactcctagggaaattcagttgctcagggtctgtgtacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
