Query= MSMg01no478_g18.b1 MSMg01no478_g18.b1 CHROMAT_FILE:
MSMg01no478_g18.b1 PHD_FILE: MSMg01no478_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:08 2005
(411 letters)
>mm_chr9_99632387_99633197
Length = 811
Score = 770 bits (398), Expect = 0.0
Identities = 410/418 (98%), Gaps = 7/418 (1%)
Strand = Plus / Plus
Query: 1 ttccaagaagcttaatattatctcaacatttgagtgtatttttatttaatgtgattaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttccaagaagcttaatattatctcaacatttgagtgtatttttatttaatgtgattaatg 253
Query: 61 ctgtattagtgtatgtacatctccaatattttctattttaagtgaaaatgatacaagtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgtattagtgtatgtacatctccaatattttctattttaagtgaaaatgatacaagtat 313
Query: 121 cttagaacggtaattacttcctgatttcattattttcctaggataaactctatgaggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cttagaacggtaattacttcctgatttcattattttcctaggataaactctatgaggcag 373
Query: 181 aatatttgatacagacataaaacaagttgagattttaaaaggatcattttcattgtcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aatatttgatacagacataaaacaagttgagattttaaaaggatcattttcattgtcttc 433
Query: 241 aaagctaaaacttttcaatatttttatcatttcaggaacaagcaggtggggtcctgtccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaagctaaaacttttcaatatttttatcatttcaggaacaagcaggtggggtcctgtccc 493
Query: 301 tct-------ccccccccaacttgaagcttttgatttgcttgctgatgaacatggcttcc 353
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcttccccccccccccccaacttgaagcttttgatttgcttgctgatgaacatggcttcc 553
Query: 354 tacctgagtagacatttttatttttctgttttgattttgggattcatgttactgagta 411
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 554 tacctgagtagacatttttatttttctgttttgattttggtattcatgttactgagta 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_g18.g1 MSMg01no478_g18.g1 CHROMAT_FILE:
MSMg01no478_g18.g1 PHD_FILE: MSMg01no478_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:09 2005
(625 letters)
>mm_chr9_99825697_99826723
Length = 1027
Score = 953 bits (493), Expect = 0.0
Identities = 523/535 (97%), Gaps = 6/535 (1%)
Strand = Plus / Minus
Query: 95 atctggcgcatgccagttctccaaatgcctggattcgtgttgccacaccaacagtgatca 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 atctggcgcatgccagttctccaaatgcctggattcgtgttgccacaccaacagtgatca 968
Query: 155 ggaaacacttgagtagaactgagtgcagtggcacctgcctacaactccagcacttggaag 214
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 ggaaacacttgagtagagctgagtgcagtggcacctgcctacaactccagcacttggaag 908
Query: 215 tcagaggcaggaggattgccacaagtttgtttg--ttcatggtgattttgaagccagccg 272
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 907 tcagaggcaggaggattgccacaagtttg--tggcttcatggtgattttgaagccagccg 850
Query: 273 gagttatagacaagatgcctcaggagctgggtgcgggagagaaagctaagcaaggttcag 332
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 849 gagctatagacaagatgcctcaggagctgggtgcgggaaagaaagctaagcaaggttcag 790
Query: 333 gagagtctgcatgcagattcatgtgtgttcaaacaggactctggtttcttttctacttgg 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gagagtctgcatgcagattcatgtgtgttcaaacaggactctggtttcttttctacttgg 730
Query: 393 tacacagacagctataaacagattcaaacaagaaggaagagccagaaattgctgcgttat 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tacacagacagctataaacagattcaaacaagaaggaagagccagaaattgctgcgttat 670
Query: 453 ctctccaggacaagactctag--attgtctgggatcggaattagaaaagggatctgcctt 510
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 669 ctctccaggacaagactctagatattgtctgggatcggaattaggaaagggatctgcctt 610
Query: 511 tgttcaacataattttcatactgttcacatttctctgtgcatacattttacataaatcca 570
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 609 tgttcaatataattttcatactgttcacatttctctgtgcatacattttacataagtcca 550
Query: 571 gtagataataattcatgaagacccaatgtaagatcttgaatttttattttaaatt 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtagataataattcatgaagacccaatgtaagatcttgaatttttattttaaatt 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1027
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1017
Effective search space: 625455
Effective search space used: 625455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
