BAC Information

Click to search

BAC

Clone NameMSMg01-478I11
Chromosome9 (Build37)
Map Location 82,357,113 - 82,357,423
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478I11.T7 (MSMg01no478_i11.b1)MSMg01-478I11.TJ (MSMg01no478_i11.g1)
ACCAG559624AG559625
length707713
length of high quality
(start - end)
311 (322 - 632)319 (317 - 635)
definitionCHROMAT_FILE: MSMg01no478_i11.b1 PHD_FILE: MSMg01no478_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:16 2005CHROMAT_FILE: MSMg01no478_i11.g1 PHD_FILE: MSMg01no478_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATTTGCGGGCGCTAAANGAATCACTTTCGGAGCGGGNTNGNGGAANTC
ATACTATCTTTACCGGGGAAGCCTTGCTTGGCTCCAAGATAGCCAAGTGA
AACTCTGTTCCTCCCATTACTAGGAGTCCTCACTAGGATCATCTTCATAG
ATTCCAGAAAGATTTCACTGCAAAACTATGAAATGTCTCAGATTTTCCAT
GTCATTCTTTGGCCATGCTAATCTCTGTGTCTTTCAAATTTTTTTGTACG
TGCTGCCAAAGCAAGCACAACTTTTAAAATGTTCATGTCTGAGAAATGAT
GTAGTACTTGTANTTTGATGNTTGGACTTTATTTTTAATAACAGAATGAT
ATTTAGTTCCATCCAAAGCATATGGATTCTTCAAATAAGCAGATGGGGTG
ATTTTCTTCACTGCATGAATGACTGGGAAATAACATGTTCTGCAACTTTG
TTAACTTTCTTGATTTCTATAAATTTAACAAGTCTTATCTTAAAGATTGG
TTAAGAAATCCATGAGGCAGCAATTCTGACGAGTGAGAACATGCACTGGG
GTTGGAGATAACATTCTATATGCGTGCCATGTTCATTCTTCCTCCACTAT
CACTTCTGATGATAGGGAAGTAATAGAAAGTAAATGAATATTATTAAGCT
TAAATGTTGTTCAAGCTTGTGAATCACTAACACAGAGCTGCAGAGCCACT
GGACAAC
TGTAGTGGGAGGCCTGGNGGNCGCCATTTCATACTAGGGAGGNGAACNAN
AGATTGCTACACAAAGGGCTCACCNGAGGAATACCAAATGGCTGAGAAGC
ACTTGCATTAGTGCCCAGCATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGATTTATACTCC
TCCATTGTTGGTGTGATTGCAAGCTTGTACAACCACCCTGGAAATCAGTC
TGGCATTTCATCGATAATTGGACATAGTACTACCGGAGGATCCCACAATA
CCTCTCCTGGGCTTATATCCAGAATATGTCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTAATAATAGCCACCAGCTGGAAAG
AACCCAGATAACCCTAAACAGAGGAATGGATACTCAAAATGTGGTACATT
GCAGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGG
CAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTGCCA
GGACAGCCAGGTCTACACAGAGAAACCCTGTCTCGAATTTTTTTTAAAAA
AAAAAGTGGTACATTTCCACAATGGAGTACTACGCAGCTATTAAAAAGAA
TGAATTTATGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_i11.b1 MSMg01no478_i11.b1 CHROMAT_FILE:
MSMg01no478_i11.b1 PHD_FILE: MSMg01no478_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:16 2005
         (311 letters)



>mm_chr9_82356913_82357623
          Length = 711

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggactttatttttaataacagaatgatatttagttccatccaaagcatatggattctt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggactttatttttaataagagaatgatatttagttccatccaaagcatatggattctt 260

                                                                       
Query: 61  caaataagcagatggggtgattttcttcactgcatgaatgactgggaaataacatgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaataagcagatggggtgattttcttcactgcatgaatgactgggaaataacatgttct 320

                                                                       
Query: 121 gcaactttgttaactttcttgatttctataaatttaacaagtcttatcttaaagattggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaactttgttaactttcttgatttctataaatttaacaagtcttatcttaaagattggt 380

                                                                       
Query: 181 taagaaatccatgaggcagcaattctgacgagtgagaacatgcactggggttggagataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagaaatccatgaggcagcaattctgacgagtgagaacatgcactggggttggagataa 440

                                                                       
Query: 241 cattctatatgcgtgccatgttcattcttcctccactatcacttctgatgatagggaagt 300
           |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattctatacccatgccatgttcattcttcctccactatcacttctgatgatagggaagt 500

                      
Query: 301 aatagaaagta 311
           |||||||||||
Sbjct: 501 aatagaaagta 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)