Query= MSMg01no478_j13.b1 MSMg01no478_j13.b1 CHROMAT_FILE:
MSMg01no478_j13.b1 PHD_FILE: MSMg01no478_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:21 2005
(324 letters)
>mm_chr9_63504801_63505524
Length = 724
Score = 627 bits (324), Expect = 0.0
Identities = 324/324 (100%)
Strand = Plus / Minus
Query: 1 caggtcacctggacactttaaaccttggctagccctggtttcttttttctttttttatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caggtcacctggacactttaaaccttggctagccctggtttcttttttctttttttatac 465
Query: 61 aaaacaaaacaacccaaagtgtccaatgcaacatagctcacattctagtggccacattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaaacaaaacaacccaaagtgtccaatgcaacatagctcacattctagtggccacattgt 405
Query: 121 ttagaatctagcttatctcgttggaatgtggaagcgtggagcaaagccagggccggacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttagaatctagcttatctcgttggaatgtggaagcgtggagcaaagccagggccggacat 345
Query: 181 ggctgatgtggctcagcccagcctcaggagccaggggcacaggccacagctgctcctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggctgatgtggctcagcccagcctcaggagccaggggcacaggccacagctgctcctgtc 285
Query: 241 ccatcactcccttctccatacagtagctttgatcctctgcctctgtgctcctggcctctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccatcactcccttctccatacagtagctttgatcctctgcctctgtgctcctggcctctt 225
Query: 301 actcaactgtgagaacagggagaa 324
||||||||||||||||||||||||
Sbjct: 224 actcaactgtgagaacagggagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_j13.g1 MSMg01no478_j13.g1 CHROMAT_FILE:
MSMg01no478_j13.g1 PHD_FILE: MSMg01no478_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:21 2005
(402 letters)
>mm_chr9_63340062_63340863
Length = 802
Score = 719 bits (372), Expect = 0.0
Identities = 391/402 (97%), Gaps = 8/402 (1%)
Strand = Plus / Plus
Query: 1 ggggagcttctccaggagcttaaggaagtctcctctgcagcgctcagctgtgcgttctgc 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 ggggagcttctccaggagcttaaggaagtttcctctgcagcgctcagctgtgcgttctgc 260
Query: 61 taatggtttgggaggccactagcatcttcttatcaatgcagcacgtacaacaagagccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatggtttgggaggccactagcatcttcttatcaatgcagcacgtacaacaagagccgg 320
Query: 121 agcactattgctagatacagcattctactcatggggatttctcccgagggggaaaaaaag 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcactgttgctagatacagcattctactcatggggatttctcccgagggggaaaaaaag 380
Query: 181 cagaatttgtttttgttttaaaggcatatactatatagacatttctctggtccccaatta 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaatttgtttttgttttaagggcatatactatatagacatttctctggtccccaatta 440
Query: 241 aaaaacaaacaaacaaacaaacaaacaaacaaacaaaagcaaaacaaaactggagaagag 300
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 aaaaacaaacaaacaaacaaacaaacaaa--------agcaaaacaaaactggagaagag 492
Query: 301 cttaagttttcagacaggtgagtgttttagcatattagaattaataaaagggaataacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttaagttttcagacaggtgagtgttttagcatattagaattaataaaagggaataacat 552
Query: 361 gcagccattaattgtgatgaaaatgggtaaaggggaaaatgg 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gcagccattaattgtgatgaaaatgggtaaaggggaaaatgg 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
