BAC Information

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BAC

Clone NameMSMg01-478J18
Chromosome9 (Build37)
Map Location 20,296,589 - 20,297,265
singlet/doubletsinglet
Overlap geneZfp426
Upstream geneOlfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26
Downstream gene5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478J18.T7 (MSMg01no478_j18.b1)MSMg01-478J18.TJ (MSMg01no478_j18.g1)
ACCAG559685AG559686
length744742
length of high quality
(start - end)		397 (317 - 713)677 (66 - 742)
definitionCHROMAT_FILE: MSMg01no478_j18.b1 PHD_FILE: MSMg01no478_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:22 2005CHROMAT_FILE: MSMg01no478_j18.g1 PHD_FILE: MSMg01no478_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTTCAAGAAGAGGGCGGAATTCTTTGT
TTTGCTCTAAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCTTTGCAGAAGCTTTACAATTTTGTCCTCTATCAT
CATCATGAGAAATGTTTTTAAATCTGGGTCTAGATTTTTGGTTGTGTTGG
GGTGCCCTTTATTATTGTGGGGTGGGAGTGCTGCGTTCTGATGATGGTGA
GTGGTCTTGATTTCTGTTAGTAGGATTCTTACGTTTGCCTTTCGCCATCT
GGTAATCTCTGAAGCTAGCTGTTTTAGTTGTCACTGTTAAGAGCTTGTTC
TTCAGGTGACTCTGTTAGCCTCTATAAGCAGACCTGGAGGGTAGCACTCT
CCTTAGTTTCAGTGGGCAGAGTATTCTCTGCAGGCAAGCTCTCTTCTTGC
AGGGCAGGTACCCAGATATCTGGTGTTCGAACCAGACTCCTGGCAGAAGT
TGTGTTCCACTCACTAGAGGTCTTAGGATCTCGTGTGGAATCCTGTGTGG
GCCCTTGCGGGTGTCAGGCGACTCCGCTGGCAAGGTAGCCCGGGACTCGA
GTGGAGCGGAAGGGGTTTGTGCCCCAGATCAAGCCCGGGTAGCC

GTGAGGCCTGGCGGCCGCCTGGTTTCCAAATGGGGGGTGACCTATAGAAG
TTTCAGCGAAATTCAACCGAGGTAGACTCCCGGGCCTGGCTCTGCAGCAG
ACCGAGCGCGAGCGGAAGTGACGTCATGCCCGCGCCCGTCTCTTCCGGCT
CTTATCTGCACTGAAGAGTTGCGGAGTTGGCTGGCATTCGAGAGTTCTGC
GGTACAAGGACTACCTGGAGGCGGAGGGGGAGATAGAGAACGAGAGTGCA
GAGCTCTGCTCCGCTTGCCACGGCGCCTCCGGGCGCGGCCAAGCCTGAGT
CCTCTCTGTCTGTCAGTCGCCAGGGTGGGGAAGTGCCCAGAGGGCGGGCC
TGGCGATGGCTGCGGCTACGATGCTGCTCTTCAAAAGCCGCCCAAGCAAA
TTCTGTGCGAAAGGCTCTTTTATTTTTCTCCTCAGAAATGAAATTTTGCC
GGAGTAGTTGGAGTGATCAGCGCCATACACCTTGCGATTTCAGCGCCTCT
GGTGAGCACTCAGTGAAAGGTCGCTTTTGGAAAAAGCCGTATTCCCTTTT
TAAAAAATATTAGAGACGAATGTCGGGGTGAGAACTTAATTCATATTGTT
AGATTGTACTTTACTTAGTGAGTGCGTGTTTTATTTTGACCATTAGTTTC
AGATACAGAGACAAATTTCTTAGTTACTTCGAATGTACGTCTTTCTTGAG
AGAATATAAACATTGGTAGACCTCCAGCCCATTCATAGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_j18.g1 MSMg01no478_j18.g1 CHROMAT_FILE:
MSMg01no478_j18.g1 PHD_FILE: MSMg01no478_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:22 2005
         (677 letters)



>mm_chr9_20296389_20297465
          Length = 1077

 Score = 1255 bits (649), Expect = 0.0
 Identities = 670/677 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgaggtagactcccgggcctggctctgcagcagaccgagcgcgagcggaagtgacgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 accgaggtagactcccgggcctggctctgcagcagaccgagcgcgagcggaagtgacgtc 818

                                                                       
Query: 61  atgcccgcgcccgtctcttccggctcttatctgcactgaagagttgcggagttggctggc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 817 atgcccgcgcccgtctcttccggctcttatctgcactgaagagttgcggagttgcctggc 758

                                                                       
Query: 121 attcgagagttctgcggtacaaggactacctggaggcggagggggagatagagaacgaga 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 attcgtgagttctgcggtacaaggactacctggaggcggagggggagatagagaacgaga 698

                                                                       
Query: 181 gtgcagagctctgctccgcttgccacggcgcctccgggcgcggccaagcctgagtcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gtgcagagctctgctccgcttgccacggcgcctccgggcgcggccaagcctgagtcctct 638

                                                                       
Query: 241 ctgtctgtcagtcgccagggtggggaagtgcccagagggcgggcctggcgatggctgcgg 300
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctggctgtcagtcgccaggctggggaagtgcccagagggcgggcctggcgatggctgcgg 578

                                                                       
Query: 301 ctacgatgctgctcttcaaaagccgcccaagcaaattctgtgcgaaaggctcttttattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctacgatgctgctcttcaaaagccgcccaagcaaattctgtgcgaaaggctcttttattt 518

                                                                       
Query: 361 ttctcctcagaaatgaaattttgccggagtagttggagtgatcagcgccatacaccttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttctcctcagaaatgaaattttgccggagtagttggagtgatcagcgccatacaccttgc 458

                                                                       
Query: 421 gatttcagcgcctctggtgagcactcagtgaaaggtcgcttttggaaaaagccgtattcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gatttcagcgcctctggtgagcactcagtgaaaggtcgcttttggaaaaagccgtattcc 398

                                                                       
Query: 481 ctttttaaaaaatattagagacgaatgtcggggtgagaacttaattcatattgttagatt 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cttttaaaaaaatattagagacgaatgtcggggtgagaacttaattcatattgttagatt 338

                                                                       
Query: 541 gtactttacttagtgagtgcgtgttttattttgaccattagtttcagatacagagacaaa 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtactttatttagtgagtgcgtgttttattttgaccattagtttcagatacagagacaaa 278

                                                                       
Query: 601 tttcttagttacttcgaatgtacgtctttcttgagagaatataaacattggtagacctcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttcttagttacttcgaatgtacgtctttcttgagagaatataaacattggtagacctcc 218

                            
Query: 661 agcccattcatagaaac 677
           |||||||||||| ||||
Sbjct: 217 agcccattcataaaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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