Query= MSMg01no478_l11.b1 MSMg01no478_l11.b1 CHROMAT_FILE:
MSMg01no478_l11.b1 PHD_FILE: MSMg01no478_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:29 2005
(700 letters)
>mm_chr9_80898923_80900022
Length = 1100
Score = 1237 bits (640), Expect = 0.0
Identities = 682/698 (97%), Gaps = 5/698 (0%)
Strand = Plus / Minus
Query: 5 gaattcctt---atttctgtactaatgttgagctgtcttttattttaaaagacttgttac 61
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gaattccttagaatt--tgtactaatgttgagctgtcttttattttaaaagacttgttac 857
Query: 62 ttgattctagcataaaacaactcatttccagatcattagctttaaatttggaaaattact 121
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ttgattatagcataaaacaactcatttccagatcattagctttaaatttggaaaattact 797
Query: 122 agccaaaatatttagtctgaaactcatatttttactccttttgttctttcttctttttct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agccaaaatatttagtctgaaactcatatttttactccttttgttctttcttctttttct 737
Query: 182 tgtttttaatttggtatatgagacattgtctcacagagccgctgcttacctggaggttgt 241
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 736 tgtttttaatttggtatatgagacattgtctcacagagccgctgtttacctggaggttgt 677
Query: 242 tctttaatgggaagtagttgtaaacctcttattcattttctgccatctttcaattctgag 301
||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||
Sbjct: 676 tctttaatgggaagtagttgtaaaccttttatccattttctgccatctttcagttctgag 617
Query: 302 actacaggtgtacgttactacatttagctctgaatgccttttaaatatttggtacaatca 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 actacaggtgtacattactacatttagctctgaatgccttttaaatatttggtacaatca 557
Query: 362 ttaaactcactcagtggaaagaattgaaactccctatccaagccaaagttaattatatta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttaaactcactcagtggaaagaattgaaactccctatccaagccaaagttaattatatta 497
Query: 422 tcataagagacatctatattaaatgttactaattaaattattgatccaacaattatcgtt 481
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 496 tcataagagaaatctattttaaatgttactaattaaattattgatccaacaattatcatt 437
Query: 482 atcttttattcacaacttaaaatcttttaaacctacattgaaaatacatgttataacttt 541
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 436 agcttttattcacaacttaaaatcttttaaacttacattgaaaatacatgttataacttt 377
Query: 542 ttagaatgatactgatagaaacaccacaggaggctttgcttagaaggatcataatataat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttagaatgatactgatagaaacaccacaggaggctttgcttagaaggatcataatataat 317
Query: 602 gatgctccatccgaccttagaattatcccatagatgagttctgtttatgaaaattaatga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatgctccatccgaccttagaattatcccatagatgagttctgtttatgaaaattaatga 257
Query: 662 ttgtataaaattctctgaattatatgcacatgggttaa 699
||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgtataaaattctctgaattatatgcacatgggttaa 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_l11.g1 MSMg01no478_l11.g1 CHROMAT_FILE:
MSMg01no478_l11.g1 PHD_FILE: MSMg01no478_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:30 2005
(672 letters)
>mm_chr9_80859576_80860647
Length = 1072
Score = 1207 bits (624), Expect = 0.0
Identities = 660/672 (98%)
Strand = Plus / Plus
Query: 1 attactggcattcacaaggatagaatttcccctctcctaagcatcccacttttacaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attactggcattcacaaggatagaatttcccctctcctaagcatcccacttttacaacat 260
Query: 61 atttcctgtttccataatcgattctaaagactgagaaaataaagttataattcttaattt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 atttcctgtttccataatcgattctaaagactgagaaaataaagtcataattcttaattt 320
Query: 121 ccaaaacatactttattttttctttactagtagagttttctttgcaactcaaaggtaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ccaaaacatactttattttttctttactagtagagttttctttgcaactcaaaggtagat 380
Query: 181 tagtcatacttacgtctggaagtgtgacgatttccatggagaagtttttgctaagaaatt 240
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtcatatttacatctggaagtgtgacgatttccatggagaagtttttgctaagaaatt 440
Query: 241 atgtttatacctctcagtggcaggaaatagttcatatagaagagagagttcttctctgcc 300
||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 atgcgaagacctctcagtggcaggaaatagttcatatagaagagagagttcctctctgcc 500
Query: 301 tggtaggaaggaaggcaggcctaagttagtgcttattcttaattctctttggccccctct 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtaggaaagaaggcaggcctaagttagtgcttattcttaattctctttggccccctct 560
Query: 361 catgtctgtttttctcttcatcatctaaacttcttactgttcagattgggtggaaattaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgtctgtttttctcttcatcatctaaacttcttactgttcagattgggtggaaattaa 620
Query: 421 taacaattcaaagtcagaagctcttaggataaaattgctaatgtattccgtgatctagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacaattcaaagtcagaagctcttaggataaaattgctaatgtattccgtgatctagcc 680
Query: 481 tctgcttgtgctggtctcctctgggcaccaatctcaattttaaagcagccattccaaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgcttgtgctggtctcctctgggcaccaatctcaattttaaagcagccattccaaatg 740
Query: 541 taggtgaactttgaagtaaaatgtataggggttaatgtaagcactcctgagacaatgcct 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 taggtgaactttgaagtaaaatgtgtaggggttaatgtaagcactcctgagacaatgcct 800
Query: 601 cagatattctggctcttgtataaaggtatttcatacattttaaatgcactctctaggtaa 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 801 cagatattctggctcttgtataaaggtatttcatacattttaaatgcactctcttggtaa 860
Query: 661 tggttcaacccc 672
||||||||||||
Sbjct: 861 tggttcaacccc 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
