BAC Information

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BAC

Clone NameMSMg01-478P11
Chromosome9 (Build37)
Map Location 42,565,226 - 42,565,620
singlet/doubletsinglet
Overlap geneGrik4
Upstream gene6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel
Downstream geneArhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478P11.T7 (MSMg01no478_p11.b1)MSMg01-478P11.TJ (MSMg01no478_p11.g1)
ACCAG559957AG559958
length733737
length of high quality
(start - end)
412 (313 - 724)394 (247 - 640)
definitionCHROMAT_FILE: MSMg01no478_p11.b1 PHD_FILE: MSMg01no478_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:48 2005CHROMAT_FILE: MSMg01no478_p11.g1 PHD_FILE: MSMg01no478_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTTCAAAAAGGAGCCGCGGAATTCACCA
TTCCCAAAATGAGTTGAGCAGAGGGNCCTGGGCTGCAGTTGACAACACAA
CCTGTGAATCCTTTGATCATAGTAGCTTGAGCGAAGCCCCATCATGCTAA
GCCAGACAGATGACCTACACAGGCAGCTAACATTGTGATAATTTGTCGTA
TGGTGATAGGAAACAGATACTGTGCACCAATGCCTTTTATGGAAAGAAAA
GGACGAGAGGCTGGCAGGGGGAGAAACGCCAAATCCTCTCACACACCATG
TGTCCATAAGATAGACAGGATTCAACTTTCTCTGAGACTCACTTTCCTGC
TTTATAGAACCACAACTCTACCTTGCTGGGTCACTGTTAATGCTTAAAGA
TCTTGAATATAGGGCTTGGGGAGATAGCTCTGTCAGAAAAGTGCTTGCCA
CGCCAGCCAGTCAGCATGAAGACCTGAGTTTGATACCTGGGACCTACACA
AAAAAACCCTGAGCAAGGTGACATGCTGTCATAATCATGTTACTGGGGAG
AAAAAGGTAGGTGGATACCTGGAGTTTGACAGCCAGCAGGCAGAACTTAC
ATGGTGAGCTCCGGGCCAGGGAGATCATCTCAGGATTTTAGGTAATGATG
CCTATAGAACACCTCANAGGATGACCCCCCAGTGTCCGTGCTCATACACA
TGTCTACCCCCTTACATACAAAGACCAAGTGCT
GAGTAGGCCTGGAGGNCGCCGGTTTCAACAAGGGGAGGTNGAACNATAGA
ATGACTACAAAAAAGGGCTCCCTCTCTCACTACCCCAGGGCCACTACTGC
TGACTAGCTCCACCAGCCAAGAGTCAGAGATGGAGCAGAGATTGAAGCCA
GGGATGTGAGCAAGGGAGGGGAAAAAAGAGCCTGGGGGCAGACCCCTGGA
GGCACCAAGCTGGGAGCCCAGGCAAGGAAACAGAACCCATATTTGGTCCA
AGAGAAGGAAGCCCTTTGGGTAGGTCACAAACTACACTGAGAGCATTGTG
AGCCTCTTAGATGATTTAGGAGCCCCTCCCTGACTGATTGCTGAGCTCAA
TGAAGACTTATTGGTTTAGGCTGAGTCCTGCCCCACCCCTCAATTGCAGC
TCCCCCTCTTTGCTCCTTGCTGGGTGTACCTTTCCTAGACATCATTTCCC
CCACCAGTGCCTCCCTGGTCAGGTAGGGACAATGACATTTGCAAAGGTCT
CAGGGATTTTCAAGTCCCAGTGGCCCAGGGAGGGAAAGGTCACATGGCTT
TATTGCAGGGTGCACAGGCAACCCTCCATCTCCCCTGTGGGGCCTGTGGA
CTCTGGGCCAGAGGTCCTGTTTGTTGAGACAGAGCTGGGTGGAGACAAGA
GAGCCTTCTGCGTTCCAGCTTGAACTTAATTTGTACATGGCAACATTGTT
TCCTTAGATCTTCTCTGCACAATAGCACTCAGCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_p11.g1 MSMg01no478_p11.g1 CHROMAT_FILE:
MSMg01no478_p11.g1 PHD_FILE: MSMg01no478_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:48 2005
         (394 letters)



>mm_chr9_42565026_42565820
          Length = 795

 Score =  702 bits (363), Expect = 0.0
 Identities = 387/395 (97%), Gaps = 1/395 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaagagaaggaagccctttgggtaggtcacaaactacactgagagcattgtgagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tccaagagaaggaagccctttgggtaggtcacaaactacactgagagcattgtgagcctc 536

                                                                       
Query: 61  ttagatg-atttaggagcccctccctgactgattgctgagctcaatgaagacttattggt 119
           | ||| | |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcagaagaagctaggagcccctccctgactgattgctgagctcaatgaagacttattggt 476

                                                                       
Query: 120 ttaggctgagtcctgccccacccctcaattgcagctccccctctttgctccttgctgggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttaggctgagtcctgccccacccctcaattgcagctccccctctttgctccttgctgggt 416

                                                                       
Query: 180 gtacctttcctagacatcatttcccccaccagtgcctccctggtcaggtagggacaatga 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 415 gtacctttcctagacatcatttcccccaccagtgcttccctggtcaggtagggacaatga 356

                                                                       
Query: 240 catttgcaaaggtctcagggattttcaagtcccagtggcccagggagggaaaggtcacat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 catttgcaaaggtctcagggattttcaagtcccagtggcccagggagggaaaggtcacat 296

                                                                       
Query: 300 ggctttattgcagggtgcacaggcaaccctccatctcccctgtggggcctgtggactctg 359
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 295 ggctttattgcagggtgcacaggcaactctccatctcccctgtggggcctgtggactctg 236

                                              
Query: 360 ggccagaggtcctgtttgttgagacagagctgggt 394
           |||||||||||||||| ||||||||||||||||||
Sbjct: 235 ggccagaggtcctgttcgttgagacagagctgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space:   302610
Effective search space used:   302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)