Query= MSMg01no479_c03.b1 MSMg01no479_c03.b1 CHROMAT_FILE:
MSMg01no479_c03.b1 PHD_FILE: MSMg01no479_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:01 2005
(658 letters)
>mm_chr9_36823090_36824147
Length = 1058
Score = 1189 bits (615), Expect = 0.0
Identities = 639/647 (98%)
Strand = Plus / Plus
Query: 4 tgtttagccagagaagcctggcagcagggtcagtgtctctttctcatcaggtgctgtgga 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 tgtttagccagagaagcctggcagcagggccagtgtctctttctcatcaggtgctgtgga 263
Query: 64 gacagaagactgatggctcctggtgatacagtggacctggagacagtgacactcccttgg 123
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacagaagactgatggctcttggtgatacagtggacctggagacagtgacactcccttgg 323
Query: 124 tctgcctcaatccccttgactttgttccccactggaatatggaatggtcaacagttccct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgcctcaatccccttgactttgttccccactggaatatggaatggtcaacagttccct 383
Query: 184 aatccaggctcccccttgccaagcaagatagtggaaaacaacccagaggttgaattcttc 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 aatccaggctcccccttgccaagcaagatagtggaaaacaagccagaggttgaattcttc 443
Query: 244 cctgaaggcctgcaagctcagttaaggtaagagatagtcttgctgctggtggcaaggaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctgaaggcctgcaagctcagttaaggtaagagatagtcttgctgctggtggcaaggaag 503
Query: 304 taccagtggtcagaagataccacaggtgaacccctcacctctgtggatcttagagagtac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taccagtggtcagaagataccacaggtgaacccctcacctctgtggatcttagagagtac 563
Query: 364 tgccagtggctctctgatcagacatggccttggttacatagcagatggtgaggggtaggg 423
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 tgccagtggctctctgatcagacatggccttgggtacatagcagatggtgaggggtaggg 623
Query: 424 atagctcatgggcagaagtgaccagttctctgcatctctcaaaccttccaggtctggaga 483
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 atagctcatgggcagaagtgaccagttctccgcatctctcaaaccttccaggtctggaga 683
Query: 484 ccaaatatggcctttctggttatgacatcttcactgtgctttccttgcctgaaatacttt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 ccaaatatggcctttctggttatgacatcttcactgtgctttccttgcctgaaacacttt 743
Query: 544 tgttctcctccctgccagcataatgtctacttcaatgtccagctctgatgtcaccttctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgttctcctccctgccagcataatgtctacttcaatgtccagctctgatgtcaccttctc 803
Query: 604 tgtgagtgctccctggatgtcctccaggtagcacagccacccccccc 650
| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 804 tatgagtgctccctggatgtcctccaggcagcacagccacccccccc 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_c03.g1 MSMg01no479_c03.g1 CHROMAT_FILE:
MSMg01no479_c03.g1 PHD_FILE: MSMg01no479_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:01 2005
(569 letters)
>mm_chr9_36987647_36988622
Length = 976
Score = 1054 bits (545), Expect = 0.0
Identities = 566/577 (98%), Gaps = 9/577 (1%)
Strand = Plus / Minus
Query: 1 ggtagccgatgtctgtgttctgaactgtgtgcagcgctctgtgcagtgtgttgaaagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggtagccgatgtctgtgttctgaactgtgtgcagcgctctgtgcagtgtgttgaaagctc 717
Query: 61 aggtccttctccatccctgcccgtgtccagtacatcctgggtacacagctgccctcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aggtccttctccatccctgcccgtgtccagtacatcctgggtacacagctgccctcagca 657
Query: 121 ctttggctggaccatgaccttggctgcctgccgcatcacactcctcgtcttcaagcaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctttggctggaccatgaccttggctgcctgccgcatcacactcctcgtcttcaagcaagc 597
Query: 181 ctgattttatttaaattggtccccaaaggcacaggagtgacatgaaggaggtagggggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctgattttatttaaattggtccccaaaggcacaggagtgacatgaaggaggtagggggtc 537
Query: 241 ttggaactttttctttggatgaggggttctactgtacttgagaaaaaaaaatcaagtgtt 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 536 ttggaactttttctttggatgaggggttctactgtacttgag-aaaaaaaatcaagtgtt 478
Query: 301 atactcttctg------accccccc--cccccatcgtgaaggactgaagcaagatggcct 352
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 477 atactcttctgactcttaccccccccacccccatcatgaaggactgaagcaagatggcct 418
Query: 353 cctagggaaaagaaattcttccttatcagtttagacctttgttagcccctggaggctcag 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cctagggaaaagaaattcttccttatcagtttagacctttgttagcccctggaggctcag 358
Query: 413 aggaatgatgcttttaccctgggggagttgctgtgatcctatggacagtctggctccctc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aggaatgatgcttttaccctgggggagttgctgtgatcctatggacagtctggctccctc 298
Query: 473 taacagtcaccagcacagatgaatatggcctcattccccatgtggcacagaaccttttca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 taacagtcaccagcacagatgaatatggcctcattccccatgtggcacagaaccttttca 238
Query: 533 aataaactcttcttatttatttatttcctacaatgcc 569
||||||||||||||||| |||||||||||||||||||
Sbjct: 237 aataaactcttcttattcatttatttcctacaatgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 976
Length adjustment: 10
Effective length of query: 559
Effective length of database: 966
Effective search space: 539994
Effective search space used: 539994
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
