NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGCTCTCGGGCAGCTGCTTTTTGCTAGACAGATATATCT
AGGCAGAAGCCTCTTGCCACACATCATTTGAGTGGCTGTGTTCTCTGCTT
ACAATTCAGGTATCCTGCACTATGCACACAGCCCAATCTTTTCTATTAAG
TGTATTGTTCCTTTGAGTTAGGTTCAGGCCTAAATTAGGCTGACATCAAA
TGTAGCTGTCCGTTGGTCCTAACACACATGGTATAGATTCCTCTTCTCAA
GAGTGAGAGCCAGAATGCTTTGTGTGACTGTGGAATGAAGATGACTGTGT
AAGCTTCTCCCACCGGCTTCCATTTCCCTGCTCATCAGCTCTGACGGAGT
CTGCCTTCAGTTTTAATCATGTTAGGGTTAGTTCCAAATGCTGATATCAA
GACACAGCAAAGCCTCAACATAATAACTGCAGGAGTCTGTGGCCCTTGGA
GAGATGAATGAGGCAGATCTGACTCACTTTATTTGAAAATAACTTTTCTG
ATACATGAAATTGCTGTAATTCCACTAATACCAGAAACAGGTGGCAGAAA
TTAATGACAAATCACCTACCCATTTTCCTTCCAATTTGTGTGTGTTTGAA
CATTTGGAGCTACATAATTGTTTTGAGCTGAAGACAGCAGGGGCTCATGA
GGGTGTCCTGTGTGTTCAAGGCAATAAAACATTTTTGATTTGGAGTGATA
GGTCGCAGCATT

NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCCACAAGGAATTCTCTTTGTTACCTTCCTTTCATA
GCATACTGTATGAACTTAATTCATTCTAAAAGTGTTCATTTGAGTACAAT
CGTAATCATTTTGGAATCGGTGTTCAAAACATAGAACATCATCTATAATT
ATATGCATATATATAATTATAGTTAATATACACTATAAACATAATGTATA
TATTTTTATGCATGTCACAATATACATTCTTATCTTTATACTTGATATGA
AATGGGCAAGTCTCACATTGCTTATAAATGTGGTCGAATAGGTGATGGGT
GCAATGGAAGTAGTCAAGAAAGGACTTTGGGTATGGAAGGGGGATTCCTG
GGGGAGGTGATATTCAAACTGGAACCAGAAGGTTGAGCATGGAAATGAGC
AAGAGGTGAGAAAAAGGATAAGGAAAGGGGAAAGCACGAGGAATCTGCTT
ACTTCTAGCATAGTTGAACACCAGGAGATGAAGATGATAGGTGTGGCATA
CTCAGTTGCTTAAAGAAGACACTAGAGAAGCAGAGTGGTGATGGAGAAGC
TGGTTTGTTAAAGAAGCTGAGTGATAATGGAGAAGCTGGTTGGTCCCAGG
TCATGCAGGTGAGGGGTTTTAGCTCTGTGCAAGTGAGATGGGAAATTATT
CTCTTACCTTATATGAGTGTCATGGCAGTTTCATGTACCTGTG

Query= MSMg01no479_p09.b1 MSMg01no479_p09.b1 CHROMAT_FILE:
MSMg01no479_p09.b1 PHD_FILE: MSMg01no479_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:08 2005
         (562 letters)



>mm_chr9_52230195_52231156
          Length = 962

 Score =  942 bits (487), Expect = 0.0
 Identities = 517/527 (98%)
 Strand = Plus / Plus

                                                                       
Query: 36  gcctcttgccacacatcatttgagtggctgtgttctctgcttacaattcaggtatcctgc 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gcctcttgccacacatcatttgagtggctgtgttctctgcttacaattcaggtatcctgc 295

                                                                       
Query: 96  actatgcacacagcccaatcttttctattaagtgtattgttcctttgagttaggttcagg 155
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 296 actatgcacacagcccaatcttttctattaagtgcattgttcctttgagttaggttcagg 355

                                                                       
Query: 156 cctaaattaggctgacatcaaatgtagctgtccgttggtcctaacacacatggtatagat 215
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 356 cctaaattaggctgacatcaaatgtagctatccgttggtcctaacacgcatggtatagat 415

                                                                       
Query: 216 tcctcttctcaagagtgagagccagaatgctttgtgtgactgtggaatgaagatgactgt 275
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 416 tcctcttctcaagagtgagagccagaatgctttgtgtgattgtggaatgaagatgactgt 475

                                                                       
Query: 276 gtaagcttctcccaccggcttccatttccctgctcatcagctctgacggagtctgccttc 335
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ataagcttctcccactggcttccatttccctgctcatcagctctgacggagtctgccttc 535

                                                                       
Query: 336 agttttaatcatgttagggttagttccaaatgctgatatcaagacacagcaaagcctcaa 395
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 536 agttttaatcacgttagggttagttccaaacgctgatatcaagacacagcaaagcctcaa 595

                                                                       
Query: 396 cataataactgcaggagtctgtggcccttggagagatgaatgaggcagatctgactcact 455
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 596 cataataactgcaggaatctgtggcccatggagagatgaatgaggcagatctgactcact 655

                                                                       
Query: 456 ttatttgaaaataacttttctgatacatgaaattgctgtaattccactaataccagaaac 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttatttgaaaataacttttctgatacatgaaattgctgtaattccactaataccagaaac 715

                                                          
Query: 516 aggtggcagaaattaatgacaaatcacctacccattttccttccaat 562
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aggtggcagaaattaatgacaaatcacctacccattttccttccaat 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no479_p09.g1 MSMg01no479_p09.g1 CHROMAT_FILE:
MSMg01no479_p09.g1 PHD_FILE: MSMg01no479_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:08 2005
         (327 letters)



>mm_chr9_52397554_52398280
          Length = 727

 Score =  594 bits (307), Expect = e-174
 Identities = 322/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgtggtcgaataggtgatgggtgcaatggaagtagtcaagaaaggactttgggtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaatgtggtcgaataggtgatgggtgcaatggaagtagtcaagaaaggactttgggtatg 468

                                                                       
Query: 61  gaagggggattcctgggggaggtgatattcaaactggaaccagaaggttgagcatggaaa 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaagggggattcctggggaaggtgatattcaaactggaaccagaaggttgagcatggaaa 408

                                                                       
Query: 121 tgagcaagaggtgagaaaaaggataaggaaaggggaaagcacgaggaatctgcttacttc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 taagcaagaggtgagaaaaaggataaggaaaggggaaagcacgaggaatctgcttacttc 348

                                                                       
Query: 181 tagcatagttgaacaccaggagatgaagatgataggtgtggcatactcagttgcttaaag 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tagcatagttggacaccaggagatgaagatgataggtgtggcatactcagttgcttaaag 288

                                                                       
Query: 241 aagacactagagaagcagagtggtgatggagaagctggtttgttaaagaagctgagtgat 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 287 aagacactagagaagcagagtggtgatggagaagctggtttgttagagaagctgagtgat 228

                                      
Query: 301 aatggagaagctggttggtcccaggtc 327
            ||||||||||||||||||||||||||
Sbjct: 227 gatggagaagctggttggtcccaggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)