BAC Information

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BAC

Clone NameMSMg01-480A09
Chromosome9 (Build37)
Map Location 29,499,294 - 29,499,527
singlet/doubletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480A09.T7 (MSMg01no480_a09.b1)MSMg01-480A09.TJ (MSMg01no480_a09.g1)
ACCAG560763AG560764
length1,182713
length of high quality
(start - end)
---234 (78 - 311)
definitionCHROMAT_FILE: MSMg01no480_a09.b1 PHD_FILE: MSMg01no480_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:13 2005CHROMAT_FILE: MSMg01no480_a09.g1 PHD_FILE: MSMg01no480_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGTATAGTGTACGTGGTCGTCCATAAAAGCGAAGCATTTACCCCAGCG
AAGAAGAATGGACTCCCGCACTTTCCCTTCCTCCCCCCCACCTACTTTTC
TTATTCCCCCATCAACCTACCCCCTACCCCCCCACCCTCTGCCCCTGACC
CCCCAACCATCATCAGCCCACAAAGAATACAGGTCCATATCTTTGTTACG
TGATACTCTTAGCGCCCGCCGCATTCTTCCCAATAATTAATATTGCGCGT
GGTAGTAGAACATGAGAAGGTAGCGGCGGTGCCATAGTGACAGGCTAGAA
GACTACTGAGTGTCTGTATAGAGCATGTTGTCGAATCGAATGCGAGGCTC
AGGGTTCGAGACGTGGAAAAGAAGTGCACCTCTACGATGTGGTCGCGCGT
AGGAGTCGCCGCACCACGACTATTGTTATTTTGTATGTTGATCATGAGAG
AGCCGGGGGGTCGCGCGCGACGGTGTGCTAGTGAGTTAAACACGTTAGTA
AGAGACGACTAATTCGACAGTATACCCCACTGAAACACACTACAGAATTG
ACTCACGACTACGAGAGCCGAGGCAAAGAGGGAAGAAATTGAACGGAGAG
GCCGGCTTCTATGTCTGAACAAGAGTCAGCATTGCGACGGCCATACATCG
GACGTACTAACGAAATAATAGTGTCGTAAAGAGACCGACAGTGCCCATAT
GTGTTATTGTGATCGTGCCCCGCAACTTTATGTAGTGGGCACTGTATGAT
TGTAGCCATACGCTCTATATCCTCTCTATATTTGTATGGCACACTGTGTC
GTCGTCGCGAACTACCACACTCCGAGCCAACAACTAAGCGAATATTCATT
CATGAATAACAGACAAGTGCCAATATTACAACACACGACCCGCGTATATA
TGGACTTCTGCATCTGCTCCGCTGTTAAGTCGGCCCCGGCATGTACTATT
GTGATTGTGCAGACGCACTTGTTGATTAATAAGCACTTGGTGAGCCCTGA
GATGCGAGACCAACTGTTGTATTACATATCCGATTCAACGTTCCAAAAGG
CCGGAGATCGATACCGCAGACAGAAATAAGACATACGCTACAGACAATAG
TAGGGGAAGAATTGCCAGAGAGCGTCGGGGTACATAAGTCGCGGATGGGT
GTCATATAAAACTAATCGCCGCCGCACGGGCN
NCCCATGAAGTGGTAGGCTGGNGGNCGNCGGCTTTCAAAACGGGNGAACN
ANAGAAGGATGGCAGTACCACGGGNNNTCCCCTTAACCCTGTTCTCCTTC
CCTTCCTCTTGCGTTCCTTCCCCGTCTTTCTTGTGTCTTTTAAATATAAA
ATGTAAAGTATTAATTTTGAGCAGAAGCAAGATTAAGCCCCCTGGAAAGG
ATTCTGGAAACGGAGCCATAGCTTGACTTAATTAAGAAGTGATTATGTTT
TAGAGTCTGTATTAACGTTCCGTGTTGCCAGTGCCAGCAGAATTGTTGTT
GGAGAAGTAGAGTCTTTTATTTTAGGGAGGATTGAGGGGGAGGATGGGGT
AATAATTGGGTAGCCAGCAATATAGCAATATTTGTTGAGGTGATGAGAAA
AATATTAGAGAAAAATGTTTCTGATTTGGAGGTTTCTCAACTCGATCTTT
CAGAATGGAGACTACCAATTTTTATATCCTGCACAGTCTTTGGGTGTCCC
CAGGATGGACCACCTCCGTTGCTTGCCTTTCCTCTGCAGGCCATGTGTCT
GAATAGTACGGAGAACACAGGCTGCGCGTGTACAATACTCCCGGGAATTT
GGTTAACCCCCCGCAGCTTTATGGAAAGCAACGACTAATTTTCCTTTTTT
TTTTATGGGCTCCTAGGCATGTGACCTGATGGGTGATTTAATTTACCGCT
AATTCTATTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_a09.g1 MSMg01no480_a09.g1 CHROMAT_FILE:
MSMg01no480_a09.g1 PHD_FILE: MSMg01no480_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:13 2005
         (234 letters)



>mm_chr9_29499094_29499727
          Length = 634

 Score =  398 bits (206), Expect = e-115
 Identities = 227/238 (95%), Gaps = 8/238 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccccttaaccctgttctccttcccttcctcttgcgttccttccccgtctttcttgtgtc 60
           ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tccccttaaccttgttctccttcccttcctcttgcgttcctttcccgtctttcttgtgtc 260

                                                                       
Query: 61  ttttaaatataaaatgtaaagtattaattttgagcagaagcaagattaagccccctggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaaatataaaatgtaaagtattaattttgagcagaagcaagattaagccccctggaa 320

                                                                       
Query: 121 aggattctggaaacggagccatagcttgacttaattaagaagtgattatgtttt----ag 176
           |||||||||||||| |||||||||||||||||||||||||||||||||||        ||
Sbjct: 321 aggattctggaaacagagccatagcttgacttaattaagaagtgattatg----ccgaag 376

                                                                     
Query: 177 agtctgtattaacgttccgtgttgccagtgccagcagaattgttgttggagaagtaga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agtctgtattaacgttccgtgttgccagtgccagcagaattgttgttggagaagtaga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)