BAC Information

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BAC

Clone NameMSMg01-480G02
Chromosome9 (Build37)
Map Location 58,718,000 - 58,718,302
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4
Downstream geneNeo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480G02.T7 (MSMg01no480_g02.b1)MSMg01-480G02.TJ (MSMg01no480_g02.g1)
ACCAG561036AG561037
length732729
length of high quality
(start - end)
532 (76 - 607)303 (324 - 626)
definitionCHROMAT_FILE: MSMg01no480_g02.b1 PHD_FILE: MSMg01no480_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:40 2005CHROMAT_FILE: MSMg01no480_g02.g1 PHD_FILE: MSMg01no480_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGA
ATTCACATGTGTACCAGATACACTACTCTATCTGGAAGACACTGTTTCCT
TAGAGGCATCCATCACCTCTGGCTCTTATAATTTTTCCACTTCCTTTTCT
GTGTAGATCCCTGAGCTCTGAAGAGAGGGGGTTTGATGATAATGTCCTAT
ACTGATGCTAGCCACAAGACAGTTGCGATGGGTACAATAATACCTGATAA
TACACACATACATACACACACACACACATACATACACACACATACATACA
CACACACACACACACACACTTATATTTACACATATATATATATGATCACT
TAATATTGTTAAGTGGTCAATTAATCAGAAAAACATAATCATCCTAAATA
CCTATGCTTCCAATAACAGCTAAAATGCATGAAACAATACAAGAACTACA
TAAGTTTATAATTATAGCCTTATTTCAATACCCTGCTTTCAATATCTGAT
AAAACAAGTCTATAGAGATCACAAGTATATAGAAGATTGGAAGATGTCCC
AACCAGCATGTTACCTAAACGACCTACAGATGCGATGAAGTTCACATTAA
AAAAAAAAACCAAAAGCAAAAACAAAAACAAACCCATAAACATCATAACA
TACTTACAGAAGGGCCAAGGGGGAAAAATACAGGAATGCAGAGAGAAGCC
TACACACTTACGGTCAGCAGGTTTAACTACCC
CATGCTGTGGGTAGGCTGGNGGCCGCCTGGTTCCCAAACTGTGGTGACCT
ATAGAAGGTGGCGCAAAATTCTGAGTGGTTTACAGCTTTCTGAAAGGAAA
AGAAAAGCTGGGATTCTTGCAGGAAAATGATGAGAGCAGGCTCCTATAGA
TGAAGTTCCTTGGGAGATGGGAGGTTAGAAGAAACTGATTATGAACAGTC
TGGACTAACAGAAGGGAAGCTGGCTGGAACTGAAGCCAGAGAGAATGTGG
GATGGGCAGGTATTACGAAGAAAGGAATATTTCCAGTCTATCAGAATGGG
TTTTCCTATCCCAATTTTTGATAAATTATACAGTTTCCAGATACTTCTGG
AGCCTGTGGTGCCTGAGTACGCAGCACAAGTTAGACATATGTTGCTGACT
TGTTCCCAGCCTAGAGGAGGGCACAGATCCTTCACAACAGAAATCACCAC
CCAGCATGGAAACCTGAGCAACAGTTTGGCAAAGGACACCATTTCCAGCC
CTGCGCAGAAGCTTGGGGGTCATGAAGCTGGTGGAGAGAATGGTGCAATT
CCACTCAAGAAAGGAACAGCTTCCCTCAATACTGCTTGCTTGGGCCAGAT
CTAACAAGAAAACAAAGAGCAGGTAACTAGTTACAACAGAAATGCTTCTT
AATGAGTTTTCTAAAGAGAGTAAGGAATAACTCTAATGAAGGAACAGAGA
ATGGTAAATTTCTCTTACCGTTGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_g02.g1 MSMg01no480_g02.g1 CHROMAT_FILE:
MSMg01no480_g02.g1 PHD_FILE: MSMg01no480_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:40 2005
         (303 letters)



>mm_chr9_58717800_58718502
          Length = 703

 Score =  586 bits (303), Expect = e-172
 Identities = 303/303 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattatacagtttccagatacttctggagcctgtggtgcctgagtacgcagcacaagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aattatacagtttccagatacttctggagcctgtggtgcctgagtacgcagcacaagtta 444

                                                                       
Query: 61  gacatatgttgctgacttgttcccagcctagaggagggcacagatccttcacaacagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gacatatgttgctgacttgttcccagcctagaggagggcacagatccttcacaacagaaa 384

                                                                       
Query: 121 tcaccacccagcatggaaacctgagcaacagtttggcaaaggacaccatttccagccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcaccacccagcatggaaacctgagcaacagtttggcaaaggacaccatttccagccctg 324

                                                                       
Query: 181 cgcagaagcttgggggtcatgaagctggtggagagaatggtgcaattccactcaagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cgcagaagcttgggggtcatgaagctggtggagagaatggtgcaattccactcaagaaag 264

                                                                       
Query: 241 gaacagcttccctcaatactgcttgcttgggccagatctaacaagaaaacaaagagcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaacagcttccctcaatactgcttgcttgggccagatctaacaagaaaacaaagagcagg 204

              
Query: 301 taa 303
           |||
Sbjct: 203 taa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)