BAC Information

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BAC

Clone NameMSMg01-480G09
Chromosome9 (Build37)
Map Location 53,131,017 - 53,131,335
singlet/doubletsinglet
Overlap geneExph5
Upstream geneLOC100042876, AI593442, Gm1715, Ddx10
Downstream geneKdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480G09.T7 (MSMg01no480_g09.b1)MSMg01-480G09.TJ (MSMg01no480_g09.g1)
ACCAG561050AG561051
length732724
length of high quality
(start - end)
329 (322 - 650)241 (324 - 564)
definitionCHROMAT_FILE: MSMg01no480_g09.b1 PHD_FILE: MSMg01no480_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:41 2005CHROMAT_FILE: MSMg01no480_g09.g1 PHD_FILE: MSMg01no480_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAGAGGCGCGG
AATCTTTTGTTTCCGACAAGACTCAGTGCTGGCACCTAGCTAAAGTTTTT
AAAAATGTCTTTTCGGCTAGGGAGAAAAGCCATTTCAACCACAATGAGCT
TTAACATTCCTAATGATGGTACGAAGACACTGAGAAATTGAATATCTATT
GGTGGATAAAGATGGGTATAGCCTGTCGTGTATAGTAGAAAGCCAAGACT
CTTGATTTAGGGTCACAAAGGAGGGTACGATTCATTCTTGCTAATATGAA
GATGGTCCTTTCAATGCTGATTCAGTCTTACTGGGGTCTGAACTCAGTTA
GAGGAAGCATCTGAAGCTGCTTGTGGTTGTGTGGTTGCCAGCCATGATAT
TCACTCACAGTGATTGCAAAGTATTTTAGTTGTCCTGTCAACCACTCGCT
CATAGGAGATCCCCAGCATTCTGGGAAATTGCTTTCTGGAGCAACCGAGT
CAACAGAAAGCCAGAAATTGGAGAAAGATGCTACAAAACCTCTAACATGT
GGGAAGTGTGTCAGAGGTTACTGAATTTCTATTTAAAATTTACAGAGTTG
AAACAAAAAAAATGAAACAATCCACTCATTCTTTATGTGNCAACTGGTTG
GAAATTAGTGAACATTTAATAATAGTCACCCGAAGTGGGTGGGATACAGG
GAAAGCCAGGAGGAGAGAGAGAGTCACGCAGG
GCAATACTGTGGGGAGGCTGGAGGGCGCCTGGTACAAAAACTGGGGTGAA
CTATAGAATTTACAGCAAAAGTCACTGCGGCTGTGGTAAGCTACGCAGGA
CCAAGCTAGCAGGGACACTCACCATTCCAATAGGCAGCACTAACTGGACT
CAATAGATTTGAAGAAGAAAAAAAAAATAGAGGATATGGAGGTGAAAAGG
AGGTGTTGGAGAGGCTCCTGGGATAGTTAGTAATAGATAAGATCAAGATG
CTCTGTCAACAACTACATAAAAGACGTTTTTAAGCCACTGTGGGTCTGTA
ATTCAGCCCTGGGGTAGCTGATTAAAGCCAGTTTACCAGAATCAGTGAGC
AACAAGTTTGATAAGAGACCCTGTCTCAAAAATCGGGTAGGGAGTGATAG
AGGAAAACTATGGTCTACACACACACACACACACACACACACACACACAC
ACACACACACACACACACGAGAACATAAAACTATATATTAAGTCTATTTT
TTATGTGAACTCAAGAAGACCTATAGAAGACCTATAGTGTATGCCTTTGA
GATGTAAAAACAGCAATGATTAAAACAAAGGTAACAAATGTAGCAGATAC
CTTGCCGTATTGAATTAAGTCTAATGGATTAGAAAAAGATTATTGTTCTG
TTTTATAAAAAATCATTTATTATGAAAACAAAGTAAAGAGGAACCGGAAG
TAAACATTGGAGGAGATGCTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_g09.b1 MSMg01no480_g09.b1 CHROMAT_FILE:
MSMg01no480_g09.b1 PHD_FILE: MSMg01no480_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:41 2005
         (329 letters)



>mm_chr9_53130759_53131486
          Length = 728

 Score =  540 bits (279), Expect = e-158
 Identities = 312/328 (95%), Gaps = 9/328 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagtcttactggggtctgaactcagttagaggaagcatctgaagctgcttgtggttgtgt 61
           |||||||||||| |||||||||||||||||||||||||||||| ||||         |||
Sbjct: 577 cagtcttactggtgtctgaactcagttagaggaagcatctgaaactgc--------ctgt 526

                                                                       
Query: 62  ggttgccagccatgatattcactcacagtgattgcaaagtattttagttgtcctgtcaac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggttgccagccatgatattcactcacagtgattgcaaagtattttagttgtcctgtcaac 466

                                                                       
Query: 122 cactcgctcataggagatccccagcattctgggaaattgctttctggagcaaccgagtca 181
           ||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 465 cactcactcataggagatccccagcattct-gaaaattgctttctggagcaactgagtca 407

                                                                       
Query: 182 acagaaagccagaaattggagaaagatgctacaaaacctctaacatgtgggaagtgtgtc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 acagaaagccagaaattggagaaagatgctacaaaacctctaacatgtgggaagtgtgtc 347

                                                                       
Query: 242 agaggttactgaatttctatttaaaatttacagagttgaaacaaaaaaaatgaaacaatc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agaggttactgaatttctatttaaaatttacagagttgaaacaaaaaaaatgaaacaatc 287

                                       
Query: 302 cactcattctttatgtgncaactggttg 329
           ||||||||||||||||| ||||||||||
Sbjct: 286 cactcattctttatgtgtcaactggttg 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 728
Length adjustment: 9
Effective length of query: 320
Effective length of database: 719
Effective search space:   230080
Effective search space used:   230080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)