BAC Information

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BAC

Clone NameMSMg01-480H14
Chromosome9 (Build37)
Map Location 13,084,469 - 13,084,784
singlet/doubletsinglet
Overlap geneLOC100039729
Upstream geneLOC622505, LOC100039680, LOC665285
Downstream geneLOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480H14.T7 (MSMg01no480_h14.b1)MSMg01-480H14.TJ (MSMg01no480_h14.g1)
ACCAG561106AG561107
length714712
length of high quality
(start - end)		643 (72 - 714)319 (325 - 643)
definitionCHROMAT_FILE: MSMg01no480_h14.b1 PHD_FILE: MSMg01no480_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:47 2005CHROMAT_FILE: MSMg01no480_h14.g1 PHD_FILE: MSMg01no480_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAAACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCAGAGGATCCG
CGGAATTCAGAGATTTCCCAGCCTCTGCCTACTAGTGCTGGGATTAAAGG
TGTACATCACAATCGATGGCCAGTTTTGACTTTCAACTGTATGCTGAATG
CAGAATTAGGAGCTTCAAATTGCACTTAGTATGAATTATAGAATTTAGCA
GGATTAAATCTGGAAATACCACTTCAGTTATAATTTAACCCAAGCCACAG
AGGGGTATTCACTGTTCATCATATAGACTATTGAGTTAATAAGAAAGTAC
TTTCTAATTTATAAGATTAACTTATAGCAACCTTTAGAACTTAATTCTTC
AGCTAATCAAGCACTGCTTAAATTTTGTCAACCTCACTGGACATAAAGTT
GATAAATTAAAACTACTCATTTAATCATATACAAAAACTCTACATTTTTG
TTTTATCAGCTCTGACATTTACAAAATCTCTAGTCATGATTAGCATTTAT
CTCATATAAAATCCAGAAATTTTCAGATACTATGCTTTTTCAAATTACCT
ACCCAACTGCAATGTGTTCCTATCAAGTGCCATCAAGACTAACACATTAG
AGATGGTAGCCCAGAGCCTTGAATCTTTCAAGACTGAACATAGGATGATT
ACCATTGGTTTGCATCCAGGCTGGGCTACATGGTGAGTTCTAGGGCAGCC
TAGGCAACAATGTA

NCCACCATGCAGTGGGTAGGCTGGCGGCCGCCTGTTTCAAACACTGGGGT
GAACTATAGAAGTTACAAAAATAATCTGTCCCCTGGGCGAGAGCAGGCAT
TCGATCCTCAGCCTCACTTTCTGGTTTGCTCTCTCCCCCACTGGCAGCTC
CGCCCTCGCTACCAGACTAGGCGGAGAGGTCATGAGGAGGCGCCACTATC
CTAAGGGTACAATTTCTGTGGAAGCAGATTTGGCTTGGGTGGTTGGAGAG
TGGTCCTCCACAGTGGCGGTGGGAGGATCATAGCTGGCGGCTCCTGTGGA
ACCCGTAATTACAGGGAATACCTGCGTTTTAGGTTTTAGATTTTAGATTT
AGATTTTAGATTTTAAGGAATTCTCTTTTTTATGCCACCTGAGGCTGCGG
CTGGGGGATGGGCAAGGATCATTTCCTTAAGGGATGCCTGCAGCGAGGTG
AGTTCTGTAGAAAGGTGGGTATACTGTTTCTGGAGCTATAAAACACTCGA
ATTTGTCTCTGGCATCTATGAGAGTGGGGATGGGCAATGTCGGAGGACAG
GGGGTGGCCAATCCAGCTTACGAGAACAATCCACTTCTTCCTCCAAAGTG
TCTGTGTCCCCAGGACCTAGAGGCCCTTCAGCCAAGGGTTTTTTTAAATA
CTGGATTGATCATGTCAATAGGAGAAGGATCCACTGGGAGAAAGGGAGAA
AGAGAAGCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_h14.g1 MSMg01no480_h14.g1 CHROMAT_FILE:
MSMg01no480_h14.g1 PHD_FILE: MSMg01no480_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:47 2005
         (319 letters)



>mm_chr9_13084266_13084984
          Length = 719

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   tttaggttttagattttagatttagattttagattttaaggaattctcttttttatgcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tttaggttttagattttagatttagattttagattttaaggaattctcttttttatgcca 263

                                                                       
Query: 64  cctgaggctgcggctgggggatgggcaaggatcatttccttaagggatgcctgcagcgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctgaggctgcggctgggggatgggcaaggatcatttccttaagggatgcctgcagcgag 323

                                                                       
Query: 124 gtgagttctgtagaaaggtgggtatactgtttctggagctataaaacactcgaatttgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgagttctgtagaaaggtgggtatactgtttctggagctataaaacactcgaatttgtc 383

                                                                       
Query: 184 tctggcatctatgagagtggggatgggcaatgtcggaggacagggggtggccaatccagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 tctggcatctatgagagtggggatgggcaatgtcggaggacagggggtggccaatccagt 443

                                                                       
Query: 244 ttacgagaacaatccacttcttcctccaaagtgtctgtgtccccaggacctagaggccct 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaccagaacaatccacttcttcctccaaagtgtctgtgtccccaggacctagaggccct 503

                           
Query: 304 tcagccaagggttttt 319
           ||||||||||||||||
Sbjct: 504 tcagccaagggttttt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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