BAC Information

Click to search

BAC

Clone NameMSMg01-480L24
Chromosome9 (Build37)
Map Location 111,287,141 - 111,441,733
singlet/doubletdoublet
Overlap geneLba1, Dclk3, LOC620615
Upstream geneScap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1
Downstream geneStac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480L24.T7 (MSMg01no480_l24.b1)MSMg01-480L24.TJ (MSMg01no480_l24.g1)
ACCAG561316AG561317
length740735
length of high quality
(start - end)		566 (52 - 617)594 (79 - 672)
definitionCHROMAT_FILE: MSMg01no480_l24.b1 PHD_FILE: MSMg01no480_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:09 2005CHROMAT_FILE: MSMg01no480_l24.g1 PHD_FILE: MSMg01no480_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,287,141 - 111,287,702)(111,441,140 - 111,441,733)
sequence
NNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCATTGGTCTCAATAAACTGATAAGTCGCAGCCTGTACT
GAAGGACCAGGAGACAGGCAGATTTATGACTGCAGGAGTAGAAGCAGCAA
AGGTATAGCAAAGGCCTGTGGGAGGCAGAGGCAGAGGCGGGAGCATGAGA
GCGGGGGCATGAGGGGAAGCAACAGAGCCACGCTGTTATAGATTTGCTCT
GTGTGAAGAGTCATTTTCAAACTATGTAATATTTAGCCCTAGAAATTGAT
AGATAGAAGTATGGAACATTTGGCTGCTGTAAAAGCAAAATCTTTTTAGG
CAGGGTGGAGGGAGGCAGCAGGGAGGGAGCTGCAAGGCAGCTGGGCAGCA
GCAGCTGCAATGTGAAGCCTCACCTTTCGTTCCTTTCAGAGCATCGTTGA
TGTTACCCATATGTGTTGTCCATGGGATTCCAATTATTTATCCCTTAAAA
AATACCTTTTGAATGTTTGAATCTAAAATTTTTTTAGGGGAGCCGGCACA
GATGAGAATGTTATAAAAAGCCTTCTCCTCGCCTGACTTTATTTTGACCC
CGCTAAAGGACTTCAGGACTCAGGTGGCTTATTGAGTTTTTGGCTGCATG
TCAATGAATGTGTCAGAACCACCATGCAAGATCATTCATCCAAAAAATAC
TTGTTGAGCTATGGGGCAGACNGTCTATTTAGACCCTAAN

NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTTGAGAGGGTAGGACAG
GACGTGCCATGTAATCAATGGTGATTAAAGACAAGCATACATTTGTGAAC
ACATATCCCTTGCGTGCCCAATTACGGAGAATTGTTGTTGGGAAGGCATT
TGCACACATGCTGTGCCCCTTTAGGGACAAGACCACTTATAGGGGGAACT
GTAAGCATGAGTTTTGTTTGCATTCTTAGGCAGGGCTGGCAAACACAATG
CAAACTCTGCTTTTGTAGCATTCAGTCTTAAGTGGAAAGGAATAGGTCAG
CAAAACCACCAAGAACCACAGTAAACCCTACACTTCTGTTCTGTCCAGAA
AGAGGCTAGGAGGCCTCTAAGACAGCGTCTAGATGCAGTCTCCAAGTGTT
CCAGCTGCTTTGGCCTTATATAACCAAAAAGCAGACCCGGTGCCAGAGTG
TGTTCCCTGAGATGCTGTCGGAGGCTCACACACAACAGTGATGCAGATGC
AGTCACAAGGGCAAAGCATGCACCAGTGCAGGCTCATCCAAGTGACATCA
TCTCAGTGATGGCAGTTACTGTCTAGTCCAGGACGTGAGCGCTACCACAC
ACATGCCTGCCGAGCTTCTTAAAGGTGCANGATGCTGGAGAGTACTTAAA
ATGCATTATATATCTGTGTACATTGCCTAACAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_l24.b1 MSMg01no480_l24.b1 CHROMAT_FILE:
MSMg01no480_l24.b1 PHD_FILE: MSMg01no480_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:09 2005
         (566 letters)



>mm_chr9_111286937_111287902
          Length = 966

 Score = 1064 bits (550), Expect = 0.0
 Identities = 559/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcattggtctcaataaactgataagtcgcagcctgtactgaaggaccaggagac 64
           ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattctcattggacacaataaactgataagtcacagcctgtactgaaggaccaggagac 264

                                                                       
Query: 65  aggcagatttatgactgcaggagtagaagcagcaaaggtatagcaaaggcctgtgggagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcagatttatgactgcaggagtagaagcagcaaaggtatagcaaaggcctgtgggagg 324

                                                                       
Query: 125 cagaggcagaggcgggagcatgagagcgggggcatgaggggaagcaacagagccacgctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaggcagaggcgggagcatgagagcgggggcatgaggggaagcaacagagccacgctg 384

                                                                       
Query: 185 ttatagatttgctctgtgtgaagagtcattttcaaactatgtaatatttagccctagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatagatttgctctgtgtgaagagtcattttcaaactatgtaatatttagccctagaaa 444

                                                                       
Query: 245 ttgatagatagaagtatggaacatttggctgctgtaaaagcaaaatctttttaggcaggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgatagatagaagtatggaacatttggctgctgtaaaagcaaaatctttttaggcaggg 504

                                                                       
Query: 305 tggagggaggcagcagggagggagctgcaaggcagctgggcagcagcagctgcaatgtga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggagggaggcagcagggagggagctgcaaggcagctgggcagcagcagctgcaatgtga 564

                                                                       
Query: 365 agcctcacctttcgttcctttcagagcatcgttgatgttacccatatgtgttgtccatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcctcacctttcgttcctttcagagcatcgttgatgttacccatatgtgttgtccatgg 624

                                                                       
Query: 425 gattccaattatttatcccttaaaaaataccttttgaatgtttgaatctaaaattttttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gattccaattatttatcccttaaaaaataccttttgaatgtttgaatctaaaattttttt 684

                                                                       
Query: 485 aggggagccggcacagatgagaatgttataaaaagccttctcctcgcctgactttatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggggagccggcacagatgagaatgttataaaaagccttctcctcgcctgactttatttt 744

                                 
Query: 545 gaccccgctaaaggacttcagg 566
           ||||||||||||||||||||||
Sbjct: 745 gaccccgctaaaggacttcagg 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no480_l24.g1 MSMg01no480_l24.g1 CHROMAT_FILE:
MSMg01no480_l24.g1 PHD_FILE: MSMg01no480_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:09 2005
         (594 letters)



>mm_chr9_111440940_111441933
          Length = 994

 Score = 1125 bits (582), Expect = 0.0
 Identities = 591/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattttgagagggtaggacaggacgtgccatgtaatcaatggtgattaaagacaagcat 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 794 tcattttgagagggtaggacaggacatgccatgtaatcaatggtgattaaagacaagcat 735

                                                                       
Query: 61  acatttgtgaacacatatcccttgcgtgcccaattacggagaattgttgttgggaaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 acatttgtgaacacatatcccttgcgtgcccaattacggagaattgttgttgggaaggca 675

                                                                       
Query: 121 tttgcacacatgctgtgcccctttagggacaagaccacttatagggggaactgtaagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttgcacacatgctgtgcccctttagggacaagaccacttatagggggaactgtaagcat 615

                                                                       
Query: 181 gagttttgtttgcattcttaggcagggctggcaaacacaatgcaaactctgcttttgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gagttttgtttgcattcttaggcagggctggcaaacacaatgcaaactctgcttttgtag 555

                                                                       
Query: 241 cattcagtcttaagtggaaaggaataggtcagcaaaaccaccaagaaccacagtaaaccc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cattcagccttaagtggaaaggaataggtcagcaaaaccaccaagaaccacagtaaaccc 495

                                                                       
Query: 301 tacacttctgttctgtccagaaagaggctaggaggcctctaagacagcgtctagatgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tacacttctgttctgtccagaaagaggctaggaggcctctaagacagcgtctagatgcag 435

                                                                       
Query: 361 tctccaagtgttccagctgctttggccttatataaccaaaaagcagacccggtgccagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tctccaagtgttccagctgctttggccttatataaccaaaaagcagacccggtgccagag 375

                                                                       
Query: 421 tgtgttccctgagatgctgtcggaggctcacacacaacagtgatgcagatgcagtcacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtgttccctgagatgctgtcggaggctcacacacaacagtgatgcagatgcagtcacaa 315

                                                                       
Query: 481 gggcaaagcatgcaccagtgcaggctcatccaagtgacatcatctcagtgatggcagtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 314 gggcaaagcatgcaccagtgcaggctcatccaagtgacatcatctcagtgatgtcagtta 255

                                                                 
Query: 541 ctgtctagtccaggacgtgagcgctaccacacacatgcctgccgagcttcttaa 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgtctagtccaggacgtgagcgctaccacacacatgcctgccgagcttcttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |