Query= MSMg01no480_o16.b1 MSMg01no480_o16.b1 CHROMAT_FILE:
MSMg01no480_o16.b1 PHD_FILE: MSMg01no480_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:22 2005
(622 letters)
>mm_chr9_8640410_8641427
Length = 1018
Score = 1158 bits (599), Expect = 0.0
Identities = 614/621 (98%), Gaps = 4/621 (0%)
Strand = Plus / Plus
Query: 1 aactctggtagaattctgctatggatatatctgagcctggaacatttagttggaagactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactctggtagaattctgctatggatatatctgagcctggaacatttagttggaagactt 260
Query: 61 attacagttgcagtctcctcctgtgtttgtttaacttgttgttttcttactggtttaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attacagttgcagtctcctcctgtgtttgtttaacttgttgttttcttactggtttaata 320
Query: 121 tcatagtttggataaatcaagaaaataaagtattttccaccttaatagagggcagatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatagtttggataaatcaagaaaataaagtattttccaccttaatagagggcagatttc 380
Query: 181 taagtattaccttaaaatattctgtatttctttgatgtattttgtaatgtttctctcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtattaccttaaaatattctgtatttctttgatgtattttgtaatgtttctctcttt 440
Query: 241 ttctcttattctgataatttgggttttctctttcttttggttagtggggccaagggtctg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctctgattctgataatttgggttttctctttcttttggttagtggggccaagggtctg 500
Query: 301 tcaatcttctttattttcctgaagaaccagctctcagatctaatgattctttgtattgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaatcttctttattttcctgaagaaccagctctcagatctaatgattctttgtattgtt 560
Query: 361 ttctttgtttctatttcattactttctgctttgatttttatttttttttctttccatcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctttgtttctatttcattactttctgctttgatttttatttttttttctttccatcta 620
Query: 421 cttggttgtgttttgatcaattaattaattattcaggagaaaattaaaaatactaaatgt 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 cttggttgtgttttgatcaattaattaattattcaggagaaaattcaaaatactaaatgt 680
Query: 481 aatactagtgcaccaaattttatacaaaacatgttcatggagttaaagacacagacagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 aatactagtgcaccaaattttatacaaaacatgttcatggagttaaagacacaga----t 736
Query: 541 taactcaagctcaatagtggtagtcagtgtcccaccttttttttttatttttatttttta 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 737 taactcaagctcaatagtggtagtcagtgtcccactttttttttttatttttatttttta 796
Query: 601 caagatacaagtcatctggac 621
|||||||||||||||||||||
Sbjct: 797 caagatacaagtcatctggac 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1018
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1008
Effective search space: 616896
Effective search space used: 616896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_o16.g1 MSMg01no480_o16.g1 CHROMAT_FILE:
MSMg01no480_o16.g1 PHD_FILE: MSMg01no480_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:22 2005
(574 letters)
>mm_chr9_8816385_8817358
Length = 974
Score = 988 bits (511), Expect = 0.0
Identities = 559/579 (96%), Gaps = 10/579 (1%)
Strand = Plus / Minus
Query: 1 agtgtccatgctgtaagatggagtgaggcacgcagtgtgatgtatcacgaaggcacagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 agtgtccatgctgtaagatggagtgaggcacgcagtgtgatgtatcacgaaggcacagtg 661
Query: 61 tgagagtcacttgaacaccagctctttgattcttcagcaggtgatctgatagatggaact 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 660 tgagagtcacttgaacaccagctctctgattcttcagcaggtgatctgatagatggaact 601
Query: 121 atgaagtggtggtatgtggctgaattgtatctgcagaacagacatg----acaaagattt 176
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 600 atgaagtggtggtatgtgactgaattgtatctgcagaacagacatgccaaacaaag---- 545
Query: 177 acaggccaaactgatgtagtcttactgtcacacaaaggagctcaacacaccatttaatac 236
||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 544 acatgccaaactgatgtagccttactgccacacaaaggagctcaacacaccatttaatac 485
Query: 237 tcattga-ttgttaatttctagaattctaatcaatgttattgaacttacagaggttctct 295
||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tca-ggagttgctaatttctagaattctaatcaatgttattgaacttacagaggttctct 426
Query: 296 ttaagaaactgaaagtgaaaactcagctaaaactcatggtgcagtgtcacagtgtctcat 355
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttaagaaactgatagtgaaaactcagctaaaactcatggtgcagtgtcacagtgtctcat 366
Query: 356 ccactaagatgttctgtttttgtttcttctgttgccatctcaaatgcttaagagtaaata 415
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccgctaagatgttctgtttttgtttcttctgttgccatctcaaatgcttaagagtaaata 306
Query: 416 ctgaagttatctgcctcatcatgttgggcattcgtggaattctagtcttcatttaaaccc 475
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgaagttatctacctcatcatgttgggcattcgtggaattctagtcttcatttaaaccc 246
Query: 476 acatgcttacatgttttatagtacaagtaatgtgagtaatgtgacattataatgtaattt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acatgcttacatgttttatagtacaagtaatgtgagtaatgtgacattataatgtaattt 186
Query: 536 ttcttttcttttttattaaattattttatatatttacat 574
|||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttcttttcttttttattaaattattttatatatttacat 147
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
