BAC Information

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BAC

Clone NameMSMg01-481A07
Chromosome9 (Build37)
Map Location 19,469,096 - 19,469,794
singlet/doubletsinglet
Overlap genenone
Upstream geneMuc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341
Downstream geneLOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481A07.T7 (MSMg01no481_a07.b1)MSMg01-481A07.TJ (MSMg01no481_a07.g1)
ACCAG561522AG561523
length761761
length of high quality
(start - end)		716 (38 - 753)693 (66 - 758)
definitionCHROMAT_FILE: MSMg01no481_a07.b1 PHD_FILE: MSMg01no481_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:30 2005CHROMAT_FILE: MSMg01no481_a07.g1 PHD_FILE: MSMg01no481_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
TGGCCCTTACCATTTTGGGGAGGAGAATTCTAATCATTGCCTCTAGAGGT
ACATGACTTAATTTTGTTGGCTGAGTAATATTCATCTGTGTAATTAAACC
CCATTTTGCTTGTCCATATTTCCATTAGTGGATATGTGGAATGTTTCCAA
TTATGTGCTATTACTAATAGAGCAGTACAGAATATTGAGTAAATGTCTCT
GTAGTAGGGTGGGAACATGTCCTATGATGGTATAACTGGATGCTAAGGTG
ACCTATTCCTATGTTCTTGTGGATCTACCAAACTGATTTCTATTAAAGCT
GCAAGTTTGAAATTTCACCAGGAGTAGATGAGTATCCCACTCACCCCACA
TTCTACCCACTATGAGCAATGAATTGTTTTATTGATAAGGGCCATTCTGA
CTGGTTTATGATGAAATCTCAAAGCAATACTAATTTGCATTTCTCTGATA
ACTAATGATGCTAAAAATTAACTGCTTCTTGCCCATTGGAGTTTGCTCTT
TGGAGTATTATCTGTTTAGAACAGTGCCCAAGTTTGTAATTTGAGTATTT
GTTTTCATGATGTCCATTTTTATGTTTTGGATATTAACTCTTTATCAAAT
CTGTAGGAGTCAAAATGTTTTTCTCCATCCTATAGGCTACACCTTTGTCT
GTGAGGATCGCATAAGATTCAGGTTGTTGTTTCTACTTTTCTTGTATCAT
TTAAGACTTGC

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAATAAAGGACAGACACTGAATGTTTATACACAA
TGAAAACAAACGTGTTAAAGTTTTTTTGTGACAAAGTTTTTAAATAAAGG
AAGAAAGATTATGTAGTATTCTTTCTGTAGTTTCTGCTCTTGGCTAGCTG
AAAATTGCTTTTATGCTATCGTGCAGCTCCATAGAATGATAGAAGACTTA
TAGGAAGCAAGTTGTTCACTTCCTGTCAGAAAAAAAAAAGAGAAAGTAAC
TTGGAGAGTGTAAAATACCTTTACAAGGTCTACCCAAACAGCTCATTTTC
CCAATCATGTCTTATATTCTATAGTTTCTACAAACTGGCAGTATTTTTCT
TAATTATGCACATACCCATAAATCAACCAGTTGGTAAACTCAGAATCTTT
ATAATCTGGAGACTTCCAGAATGCCCCACATCTGGCTATTCAATTAGGGC
TCAAATCTTAAAACCTTGAGCTTTGCGGGATGATTAAGATCCAAGAAACA
AAAATACAAATTTTATAAATTTCTGAATTCTAGTTCTTAATGTGGAATTT
GGTGACATTCTGTGCTTTGTTAATGTCATTTCATAAATGATACCTTCTAT
TTCCCCTTTATAGGTACAGATTGAATTTTTTAATGTTAGTGTCATTTGAA
AAGTGATAGCTGCTTTTAAAAATTATTGAAAATATTTTTAATGCACTGCA
TTCTAGCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_a07.g1 MSMg01no481_a07.g1 CHROMAT_FILE:
MSMg01no481_a07.g1 PHD_FILE: MSMg01no481_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:30 2005
         (693 letters)



>mm_chr9_19468896_19469994
          Length = 1099

 Score = 1245 bits (644), Expect = 0.0
 Identities = 684/700 (97%), Gaps = 8/700 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaataaaggacagacactgaatgtttatacacaatgaaaacaaacgtgttaaag-tttt 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agaataaagggcagacactgaatgtttatacacaatgaaaacaaacgtgttaaagttttt 260

                                                                       
Query: 60  tttgtgacaaagtttttaaataaaggaagaaagattatgtagtattctttctgtagtttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtgacaaagtttttaaataaaggaagaaagattatgtagtattctttctgtagtttc 320

                                                                       
Query: 120 tgctcttggctagctgaa-aattgcttttatgctatcgtgcagctccatagaatgataga 178
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctcttggctagct-aacaattgcttttatgctatcgtgcagctccatagaatgataga 379

                                                                       
Query: 179 agacttataggaagcaagttgttcacttcctgtcagaaaaaaaaa-----agagaaagta 233
           |||||||||||||||||||||||||||||||| ||||||||||||     ||||||||||
Sbjct: 380 agacttataggaagcaagttgttcacttcctgccagaaaaaaaaaaaaagagagaaagta 439

                                                                       
Query: 234 acttggagagtgtaaaatacctttacaaggtctacccaaacagctcattttcccaatcat 293
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 440 acttggagagtgtaaaatacctttacaaggtctacccaaacagctcactttcccaatcat 499

                                                                       
Query: 294 gtcttatattctatagtttctacaaactggcagtatttttcttaattatgcacataccca 353
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 500 gtcttatattctatagtttctacaaactgacagtatttttcttaattatgcatataccca 559

                                                                       
Query: 354 taaatcaaccagttggtaaactcagaatctttataatctggagacttccagaatgcccca 413
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 taaatcaaccagttgataaactcagaatctttataatctggagacttccagaatgcccta 619

                                                                       
Query: 414 catctggctattcaattagggctcaaatcttaaaaccttgagctttgcgggatgattaag 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catctggctattcaattagggctcaaatcttaaaaccttgagctttgcgggatgattaag 679

                                                                       
Query: 474 atccaagaaacaaaaatacaaattttataaatttctgaattctagttcttaatgtggaat 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atccaagaaacaaaaatacaaattttataaatttctgaattctagttcttaatgtggaat 739

                                                                       
Query: 534 ttggtgacattctgtgctttgttaatgtcatttcataaatgataccttctatttcccctt 593
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttggtgacattctgtgctttgttgatgtcatttcataaatgataccttctatttcccctt 799

                                                                       
Query: 594 tataggtacagattgaattttttaatgttagtgtcatttgaaaagtgatagctgctttta 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tataggtacagattgaattttttaatgttagtgtcatttgaaaagtgatagctgctttta 859

                                                   
Query: 654 aaaattattgaaaatatttttaatgcactgcattctagct 693
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aaaattattgaaaatatttttaatgcactgcattctagct 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1099
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1089
Effective search space:   743787
Effective search space used:   743787
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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