BAC Information

Click to search

BAC

Clone NameMSMg01-481H06
Chromosome9 (Build37)
Map Location 71,085,605 - 71,086,319
singlet/doubletsinglet
Overlap geneAldh1a2
Upstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660
Downstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481H06.T7 (MSMg01no481_h06.b1)MSMg01-481H06.TJ (MSMg01no481_h06.g1)
ACCAG561856AG561857
length7641,329
length of high quality
(start - end)		719 (37 - 755)---
definitionCHROMAT_FILE: MSMg01no481_h06.b1 PHD_FILE: MSMg01no481_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:06 2005CHROMAT_FILE: MSMg01no481_h06.g1 PHD_FILE: MSMg01no481_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCA
GCTGTTGTCTAAATGGCTGTGAAACATTCAAGCTCACAGGGAACAGAGCA
TTGTGCTTTATCACAACTTCTGATGAGCATCTTACCAGGCGCCTGCTGGT
GTTGTGCCTGCTCTTTTGGACCTCAGATATAAACGAACGAGAATGGCAAG
GCCAGTGGAAATGACAGTGGACTCAATCACAGCATCGTTTCTCAGGTCGT
TGATAGGAGATTCCTAAAGTATACTTTCAGGCTGTACCCCAGAAACTCAT
CCAGGAAGTGTCTGTCAAGGGGCAGGACAGGTTTGTGTCAGAGATGTTAT
ATATGAGCCTTTTTTTGGTTACCAAGGCTGAGACCCTCAAGACAACACTG
AAAGCTAGAAAAGTGTCTAGCAAGTCACTTGCTAGGTATTTAGCATGAAG
CCAGGGTTCGAACACAAGCAGCCTTTCTCCCTGTTCCTTCTGCTTCTCCT
CCCAACACACACTTCCAATGCTATCAAGGAAAATACTCACAGAAAGTAAT
GTCTCCTTATATATAAACTCTTATGACAGTCTGTTGAAATTAAAATGTGG
ACTGGCTATGCTGCACAGTCACTAGTGGTTGGCTGTGGGAAATTCGTTCT
CACCTGGCTTCCTAGGCTGGATTGCAGAGAGCCTGCGAAGCACCTTTGTT
CCTAAGGGCTATGACAAGATATTGGCATTGTTTTTAGGACACTAAAATTA
TATTCTGGTTAAAA

TAAGAGTTCTACTCCTCTACTTGCACCGCCCTCTCTCCCCTGTATAGGCG
GCCCGGCGCCCGCCGTCTACCCCCCATATTTCCTCTCCTTCCTCCTTCAC
TCAACACCTCACCCATATAAATAACTCAATATTTCAACCAAATAAGACAC
TGAATCACACAGCCTAGCACNAGCATGCCATCATACAATAAACAATAACA
CATCTGAAAACATACTGTGGATTCACGACTGTTCATTGATCATCGTAGCT
GTATACTATGCGTGCGCTGTGTTCGTTGGTTAGTTGGCGCGGCGACATCC
TAACGACACTCCGCAGCACGTACAATGTACGAGAAATACGACTGACAATA
GCGACTACAAGAGTAGGAGGGTGGAGCGGGCGCGCGGTCACCGTCGGTAT
TCGTCTGGGTCGCCGTCATCTGTAACAGAATGCCCGGCTATCGGTTCCGT
CTCTACGTTACGTAGATACAGCCGTNCTAGTATATCACGAGATGCGACGT
TCCTTTCGTCCGCTCCGCTCTCTCGTGTGGAGGGGCGGTGGCTGCGTGCC
GTGAGAAGGACTATTACATATATATGGTTATACGATGGCTCTTTCGCTAG
TGTAATAAAGCGAAGGCGCGACGTTAGAATGAACGTGCGTCTTCTANTCT
CCATGGTGTTGCGTATCGACTGTGAGTATCATCGGAGCAGCGACATGCAG
CGGCTATGTAGATCTATATCAGCCGTATTATTAATCGTACTCACATCGCA
CCCGATAGGTGTAGCATCATTCACTCACATAACGCCGAACACCATATTAG
CTCCAAGTAGTGCGGCTGTGGTAGTGTCGCGTAAATGACCCGGACAGCAT
ACGTAACATCTTACTGTGCGCGTTATCATTGTAGTAGTCAGATAGTGTAT
CCGGATTGCGAGTGACAGCACCGTGTCTATATGTACACGATTGATGTGAT
ATGCTCACCATACTGTTCCACTTACGCCGACCAAGGTCTTCTCAGCACCA
TTCGATACATCCTTCTACCTCTTATCGTCTATCAGTCTCTGCACACACGC
TATTTTCAGTGCTCTTATACTATTACTCCATCGAATTACCGAACACCCTC
CGTTGACACGCATTCAATCGATATTATACGATGTGAGCTATCACGCGACG
TAGCCTGCACTAGTAATCCGACTACCTCATACACACAACACGCGAAACAG
ATAGACGCGCGACGTGACACGCGTGTAGCGCGAATGACGATCATACTGCA
TACTTCAAGCTCGCGCGCGATCATATCGTTATATATAGTTGATACGCGCA
CGCGCATGCNCATTACTGCTACGTTCNCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_h06.b1 MSMg01no481_h06.b1 CHROMAT_FILE:
MSMg01no481_h06.b1 PHD_FILE: MSMg01no481_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:06 2005
         (719 letters)



>mm_chr9_71085401_71086519
          Length = 1119

 Score = 1203 bits (622), Expect = 0.0
 Identities = 694/720 (96%), Gaps = 10/720 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcagctgttgtctaaatggctgtgaaacattcaagctcac--agggaacagag 62
           ||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||
Sbjct: 205 gaattcagcagctgttgtctaaatggctgtgaaatgttcaagctcacggagggaacagag 264

                                                                       
Query: 63  cattgtgctttatcacaacttctgatgagcatcttaccaggcgcctgctggtgttgtgcc 122
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 cattgtgctttatcacaacttctgatgagcatcttaccaggcacctgctggtgttgtgcc 324

                                                                       
Query: 123 tgctcttttggacctcagatataaacgaacgagaatggcaaggccagtggaaatgacagt 182
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctcttttggacctcagatataaatgaacgagaatggcaaggccagtggaaatgacagt 384

                                                                       
Query: 183 ggactcaatcacagcatc-gtttctcaggtcgttgataggagattcctaaagtatacttt 241
           |||||| ||||||||| | ||||||||| | || ||||||||||||||||||||||||||
Sbjct: 385 ggactcgatcacagca-ctgtttctcagtttgtcgataggagattcctaaagtatacttt 443

                                                                       
Query: 242 -caggctgtaccccagaaactcatccaggaagtgtctgtcaaggggcaggacaggtttgt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 444 tcaggctgtaccccagaaactcatccaggaagtgtctgtcaaggggcaggacgggtttgt 503

                                                                       
Query: 301 gtcagagatgttatatatgagcctttttttggttaccaaggctgagaccctcaagacaac 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtcagagatgtcatatatgagcctttttttggttaccaaggctgagaccctcaagacaac 563

                                                                       
Query: 361 actgaaagctagaaaagtgtctagcaagtcacttgctaggtatttagcatgaagccaggg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 actgaaagctagaaaagtgtctagcaagtcacttgctaggtatttagcataaagccaggg 623

                                                                       
Query: 421 ttcgaacacaagcagcctttctccctgttccttctgcttctcctcccaacacacacttcc 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcgaacaccagcagcctttctccctgttccttctgcttctcctcccaacacacacttcc 683

                                                                       
Query: 481 aatgctatcaaggaaaatactcacagaaagtaatgtctccttatatataaactcttatga 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 684 aatgctatcaaggaaaatactcacagaaagtaatgtctccttatatataaactct---ga 740

                                                                       
Query: 541 cagtctgttgaaattaaaatgtggactggctatgctgcacagtcactagtggttggctgt 600
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 741 cagtctgttgaaattaaaatgtggactagctatgctgcacagtcactagtggttagctgt 800

                                                                       
Query: 601 gggaaattcgttctcacct-ggcttcctaggctggattgcagagagcctgcgaagcacct 659
           ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gggaaatgcgttctcac-tcggcttcctaggctggattgcagagagcctgcgaagcacct 859

                                                                       
Query: 660 ttgttcctaagggctatgacaagatattggcattgtttttaggacactaaaattatattc 719
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 860 ttgttcctaagggctatgacaagatattggcattgtttttaggatactaaaattatattc 919


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |