BAC Information

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BAC

Clone NameMSMg01-481J22
Chromosome9 (Build37)
Map Location 40,852,119 - 41,029,059
singlet/doubletdoublet
Overlap gene2810457I06Rik, LOC628495
Upstream gene1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam
Downstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481J22.T7 (MSMg01no481_j22.b1)MSMg01-481J22.TJ (MSMg01no481_j22.g1)
ACCAG561983AG561984
length745749
length of high quality
(start - end)		617 (67 - 683)625 (74 - 698)
definitionCHROMAT_FILE: MSMg01no481_j22.b1 PHD_FILE: MSMg01no481_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:19 2005CHROMAT_FILE: MSMg01no481_j22.g1 PHD_FILE: MSMg01no481_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,028,443 - 41,029,059)(40,852,119 - 40,852,743)
sequence
TATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATT
CTGGGACTGTTTCCTGGTGACGTATGCCTTTAATCCCAGCACTTGGGAGG
GAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCAACAGAGTAA
GTTCCAGGACAACCAGGGCTACACCAAGAAACCCTGTCTTGAAAAACCTA
AATAAATAAATAAATTAATTAATTAATTTTAAAAAAAAGAATTCTGACTT
CACTTGTGCAGAAACCTCTATGAACTCCTTGGTATGCAATGGGCAGCAGC
TTGGAGCTGTGTCTCCCACTCCTTACAGTTACTGATGTCTTCTTTGGTGA
CTCCTCAGGAAATAGTCTAAAGAACTGTTGATCCCAAAGTAAGGAAGGGA
GAAAGAGATGGAAGAGGGTGGGGAGAGAGGGTCAGAGGGGAGGGTCACAT
TCTTCTCCCCTGTTGTCTTAGTTAGGGTTTTACTCCTGTGAACAGACCCT
GTGACCAAGGCAACTCTTACAAGGACAACATTTAATTGGGGCTGGCTTAC
AGATTCAGAGATTCAGTCCATCATTAAGGCAGGAGGATGGCAGTGTTCAG
GCAGACATGGTACGGTGGGAGCTGAGAGTTCTGAACCTCCATCCAAAGCA
GACAGGAGAAGACTCTCTTCCAGGAAGCTAAGAGTAGGATCTCAAAGCCA
GAGTTACACAGNTCCTCCAACCAGGCCACACCTCCTCATAGTGCN

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGATTCTGGGAGCGTGGTGAAAAAG
AGGGGCCTGGGGAACATCTCACAGTATGAAGTAGGCTTTCCTAACAACAT
GTATGTGAATAGTTACTTGTAGGGAGCTAGCTGTCCTGGATACCACAGAA
TATTCAGTAACACCCCCCCTCCAGCCTTTATCCCCTGGATGGCAGCAGCA
CCCCAAGTCATAACCCCCAAATCATGCCTCATATTAGCAAATGTCCCCCC
AGGGTGACACTGCTCCGGGTTGTGGCCCACTCATTTGAAGGGTGCATACC
ATTATTCTAAAACACTAAAAATAAAGCGGAGCAAACCTAGCAACATGAGG
GGTGAGCTCTAATCCCCCTTTGTACGCTTCATGAGAAAGACCTTTCTGCT
TCCCAGGAGAGAACCAAGAAGAAATTAAGGGAGTCAGTCAAGTCTCAGAG
AATAGCAGGTCAGATAGAGCAGAAAACTGGTATTCTGGGATTTAGTCCCT
TTCCAATTACACTGCAGGGTGTTTTTGTAGGGTGAGTCCATGCAATGGGT
GCTTGTGGCCGTTTCCACTATCTATACTCTGGGTCTTCAGTACTTGCTGA
TGAAATGAACGCACATGGGTGAGCCTTCTCGAGCCACCCAGAAAGAAGAA
CACACCAAATATACTTGCAGAANGAATCTGGGTGAACCAGTAATTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_j22.b1 MSMg01no481_j22.b1 CHROMAT_FILE:
MSMg01no481_j22.b1 PHD_FILE: MSMg01no481_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:19 2005
         (617 letters)



>mm_chr9_41028291_41029307
          Length = 1017

 Score = 1185 bits (613), Expect = 0.0
 Identities = 616/617 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacgtatgcctttaatcccagcacttgggagggagaggcaggtggatttctgagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gtgacgtatgcctttaatcccagcacttgggagggagaggcaggtggatttctgagttca 710

                                                                       
Query: 61  aggccagcctggtcaacagagtaagttccaggacaaccagggctacaccaagaaaccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aggccagcctggtcaacagagtaagttccaggacaaccagggctacaccaagaaaccctg 650

                                                                       
Query: 121 tcttgaaaaacctaaataaataaataaattaattaattaattttaaaaaaaagaattctg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 649 tcttgaaaaacctaaataaataaataaattaattaattaatttaaaaaaaaagaattctg 590

                                                                       
Query: 181 acttcacttgtgcagaaacctctatgaactccttggtatgcaatgggcagcagcttggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 acttcacttgtgcagaaacctctatgaactccttggtatgcaatgggcagcagcttggag 530

                                                                       
Query: 241 ctgtgtctcccactccttacagttactgatgtcttctttggtgactcctcaggaaatagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctgtgtctcccactccttacagttactgatgtcttctttggtgactcctcaggaaatagt 470

                                                                       
Query: 301 ctaaagaactgttgatcccaaagtaaggaagggagaaagagatggaagagggtggggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctaaagaactgttgatcccaaagtaaggaagggagaaagagatggaagagggtggggaga 410

                                                                       
Query: 361 gagggtcagaggggagggtcacattcttctcccctgttgtcttagttagggttttactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gagggtcagaggggagggtcacattcttctcccctgttgtcttagttagggttttactcc 350

                                                                       
Query: 421 tgtgaacagaccctgtgaccaaggcaactcttacaaggacaacatttaattggggctggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtgaacagaccctgtgaccaaggcaactcttacaaggacaacatttaattggggctggc 290

                                                                       
Query: 481 ttacagattcagagattcagtccatcattaaggcaggaggatggcagtgttcaggcagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttacagattcagagattcagtccatcattaaggcaggaggatggcagtgttcaggcagac 230

                                                                       
Query: 541 atggtacggtgggagctgagagttctgaacctccatccaaagcagacaggagaagactct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atggtacggtgggagctgagagttctgaacctccatccaaagcagacaggagaagactct 170

                            
Query: 601 cttccaggaagctaaga 617
           |||||||||||||||||
Sbjct: 169 cttccaggaagctaaga 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_j22.g1 MSMg01no481_j22.g1 CHROMAT_FILE:
MSMg01no481_j22.g1 PHD_FILE: MSMg01no481_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:19 2005
         (625 letters)



>mm_chr9_40851919_40852943
          Length = 1025

 Score = 1208 bits (625), Expect = 0.0
 Identities = 625/625 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagattctgggagcgtggtgaaaaagaggggcctggggaacatctcacagtatgaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagattctgggagcgtggtgaaaaagaggggcctggggaacatctcacagtatgaagta 260

                                                                       
Query: 61  ggctttcctaacaacatgtatgtgaatagttacttgtagggagctagctgtcctggatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctttcctaacaacatgtatgtgaatagttacttgtagggagctagctgtcctggatac 320

                                                                       
Query: 121 cacagaatattcagtaacaccccccctccagcctttatcccctggatggcagcagcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagaatattcagtaacaccccccctccagcctttatcccctggatggcagcagcaccc 380

                                                                       
Query: 181 caagtcataacccccaaatcatgcctcatattagcaaatgtccccccagggtgacactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtcataacccccaaatcatgcctcatattagcaaatgtccccccagggtgacactgc 440

                                                                       
Query: 241 tccgggttgtggcccactcatttgaagggtgcataccattattctaaaacactaaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccgggttgtggcccactcatttgaagggtgcataccattattctaaaacactaaaaata 500

                                                                       
Query: 301 aagcggagcaaacctagcaacatgaggggtgagctctaatccccctttgtacgcttcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcggagcaaacctagcaacatgaggggtgagctctaatccccctttgtacgcttcatg 560

                                                                       
Query: 361 agaaagacctttctgcttcccaggagagaaccaagaagaaattaagggagtcagtcaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaagacctttctgcttcccaggagagaaccaagaagaaattaagggagtcagtcaagt 620

                                                                       
Query: 421 ctcagagaatagcaggtcagatagagcagaaaactggtattctgggatttagtccctttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcagagaatagcaggtcagatagagcagaaaactggtattctgggatttagtccctttc 680

                                                                       
Query: 481 caattacactgcagggtgtttttgtagggtgagtccatgcaatgggtgcttgtggccgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caattacactgcagggtgtttttgtagggtgagtccatgcaatgggtgcttgtggccgtt 740

                                                                       
Query: 541 tccactatctatactctgggtcttcagtacttgctgatgaaatgaacgcacatgggtgag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccactatctatactctgggtcttcagtacttgctgatgaaatgaacgcacatgggtgag 800

                                    
Query: 601 ccttctcgagccacccagaaagaag 625
           |||||||||||||||||||||||||
Sbjct: 801 ccttctcgagccacccagaaagaag 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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