BAC Information

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BAC

Clone NameMSMg01-481K05
Chromosome9 (Build37)
Map Location 8,533,378 - 8,533,724
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
Downstream geneTrpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481K05.T7 (MSMg01no481_k05.b1)MSMg01-481K05.TJ (MSMg01no481_k05.g1)
ACCAG561997AG561998
length776767
length of high quality
(start - end)
66 (72 - 137)347 (66 - 412)
definitionCHROMAT_FILE: MSMg01no481_k05.b1 PHD_FILE: MSMg01no481_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:20 2005CHROMAT_FILE: MSMg01no481_k05.g1 PHD_FILE: MSMg01no481_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGTTGCGGGGGAAACGANGAGTATCTTTCGTACTAGGCGGAANCNGGAG
ATATTTCATAAAATGGGTTGAATGTTACTTGACCCTTTTCCCTTACAGCT
TTTAATATTCTCTCTTTATTTAGTGCATTTCTTGTTCTGATTACCATTTG
TCAGCATGAATTTCTTTTCTTGTCCTGTCTATTTGGAGTTCTGTAGGCTT
CTTGTATGTTCATGGGTATTACTTTCTTTAGGTTAGGGTTGTTTTCTTCA
ACTATTTTGTGTAAGATATTTGCTGGCCCTTTAATTTGAAAAGCTTCTTT
CTCATTTTTTTTTTTCAATCCTAGGTGTGGCCTACACCTTGTGTCTTGCA
TTTCTGGGATGCATTGTGTTAGAATCTTTTTCTTCCATTTTCTTTGATTG
TTGCTTCCATTGTTCTCTATGGATTCTTCTGTCATCTTACATTCTTTTCC
CTATCTCTTGTGTTCTGTTGATGATGTTCTGCATTAATGGTTTTCTGATT
CCCTTTCTATAGTTTCCAACCCCCAATACTTACTCCCTTTCGGCCCTTGT
CTATTGTCTGCGACATTTTCTCCCTAGAAACTTTGAAGTCATGTGTCAAC
TACATTACATCAACTGGTCTGCGGATTACCCTGAAAATTCCCATTTCGCA
TACGCCGTGCTTTATTTTCTTTATCATTAGTAGCACTATAAACCTTTTGA
ATTCCTTCTTAGTTATCTATCCATCTCCATGATTTTCTCTCCCGTGCTTA
CATTATCCATTCTTTCTTTCTTGCGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATTTGTGCTTTTTGTGGGGTGGGATAAGGTGTAG
GAGTGAGAAATGAGTTCAGGAAGTCCTCAAATCCTCCTGCCTCAGTCACT
TTAGGGCTGGGAATACAGCTGCACACTACAGCAAATGACTAAGCCTCACT
AAACATGATAACTGATATCACCTGATGTCTCTATGTTACAGGTTGTTAAT
CTGGAAATGTAATTACTAAAGGCAACTCTGCCTCTATTGTCCCACATTCT
CTAGTCGTGTAAGCAGTATTTCTTTTATAGTTAAGTCCGTAAAGAACAAG
AGGATACCTTCCCTACCAAATGCTTCTGAATTAAGTGTAGAATATTGAGC
AGATCTGGAAGAACCACCAAAGATTAAGATTTAAAAATGCCATATGAGAG
AAGAACATGAAGTTCTCACAGAGTCGGACATTTTAATTCAAACCCTGTAG
TCTCGTTTAGAGTGTTTCAATTTTTAATTCTAAACTCGAGGGTAAATGTG
AGCGATGTCCTGTAAGGACTCTTTGCCTCTGTAAACATATCAGCACTACG
TGACTAATTTTACAAAAACTAATACATGGCCTTGAAAATACAGATACCGG
TAGAGAGTGTTGCTTTTGGCGCAAAATCCAACATTGGGGTTCCTGAATCC
ACATGGCTATTTTACCACCATTTGGAATTCCATTTACTCGGGTATCCATC
ATATTTCTTCTCGAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_k05.g1 MSMg01no481_k05.g1 CHROMAT_FILE:
MSMg01no481_k05.g1 PHD_FILE: MSMg01no481_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:20 2005
         (347 letters)



>mm_chr9_8533075_8533821
          Length = 747

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttgtgctttttgtggggtgggataaggtgtaggagtgagaaatgagttcaggaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 catttgtgctttttgtggggtgggataaggtgtaggagtgagaaatgagttcaggaagtc 591

                                                                       
Query: 61  ctcaaatcctcctgcctcagtcactttagggctgggaatacagctgcacactacagcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctcaaatcctcctgcctcagtcactttagggctgggaatacagctgcacactacagcaaa 531

                                                                       
Query: 121 tgactaagcctcactaaacatgataactgatatcacctgatgtctctatgttacaggttg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 530 tgactaagcctcactaaacatgataactgatatcatctgatgtctctatgttacaggttg 471

                                                                       
Query: 181 ttaatctggaaatgtaattactaaaggcaactctgcctctattgtcccacattctctagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttaatctggaaatgtaattactaaaggcaactctgcctctattgtcccacattctctagt 411

                                                                       
Query: 241 cgtgtaagcagtatttcttttatagttaagtccgtaaagaacaagaggataccttcccta 300
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cgtgtaagcagtagtgcttttatagttaagtccgtaaagaacaagaggataccttcccta 351

                                                          
Query: 301 ccaaatgcttctgaattaagtgtagaatattgagcagatctggaaga 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ccaaatgcttctgaattaagtgtagaatattgagcagatctggaaga 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)