Query= MSMg01no481_p04.b1 MSMg01no481_p04.b1 CHROMAT_FILE:
MSMg01no481_p04.b1 PHD_FILE: MSMg01no481_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:45 2005
(617 letters)
>mm_chr9_118827274_118828296
Length = 1023
Score = 632 bits (327), Expect = 0.0
Identities = 406/441 (92%), Gaps = 21/441 (4%)
Strand = Plus / Minus
Query: 196 taaccctggttgtcctggaactcactctgtagaccaggttgtccttaaactcacataggt 255
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1023 taaccctggctgtcctggaactcactctgtagaccaggttgtccttaaactcacagaggt 964
Query: 256 cttcctggctctgcccccagagtgctagtact-aaggtgtgagccaccacctcccggccc 314
||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 963 tttcctggctctgcgcccagagtgctggtactaaaggtgtgagccaccacctcccggccc 904
Query: 315 ccaaactcattttcctgtgagctgtgtctgtgagtccttggtggggtgagtctcccttag 374
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 ccaaactcattttcctgtgtgctgtgtctgtgagtccttggtggggtgagtctcccttag 844
Query: 375 ctg-aggga---------aggtgaagaaccagcatgagaggcctcaagcaggggggcctc 424
| | ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ccgcagggagggtcccgtaagtgaagaaccagcatgagaggcctcaagcaggggggcctc 784
Query: 425 tacctgtttaagggttcacaggagcccatcgcagtcaccatgtggggggaaatccaccac 484
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 783 tacctgtttaagggttcacaggagcccatcgcaatcaccatgtggggg-aaatccaccac 725
Query: 485 ctggtgggtctcagagtgactaggtccctcagcc-agttctagaaatggag------gcc 537
||||||||||||||||||||||||| |||||||| | |||||||||||||| |||
Sbjct: 724 ctggtgggtctcagagtgactaggttcctcagccca-ttctagaaatggagccacaggcc 666
Query: 538 tgggggtcactccagaccacaacaggttcctttggataa-gtcatttgtcacaaataggg 596
||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||
Sbjct: 665 tggggatcactccagaccacagcgggttcctttggataaagtcatttgtcacaaatatgg 606
Query: 597 tgcctctgcacttcctgtttc 617
|||||||||||||||||||||
Sbjct: 605 tgcctctgcacttcctgtttc 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1023
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1013
Effective search space: 614891
Effective search space used: 614891
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_p04.g1 MSMg01no481_p04.g1 CHROMAT_FILE:
MSMg01no481_p04.g1 PHD_FILE: MSMg01no481_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:45 2005
(424 letters)
>mm_chr9_118618599_118619421
Length = 823
Score = 768 bits (397), Expect = 0.0
Identities = 415/421 (98%), Gaps = 1/421 (0%)
Strand = Plus / Plus
Query: 1 cacgcagctgctatggatcaagaccagactacaggagtgttagcacatcgagatgaattg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgcagctgctacggatcaagaccagactacaggagtgttagcacatcgagatgaattg 260
Query: 61 tctgtcttctaggcaaagagaagttgctggtgttgtttctggggctggaggatgttactt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tctgtcttctaggcaaagagaagttgctggtgttgtttctggggcaggaggatgttactt 320
Query: 121 gattgacagtgctcaggaaatgaacattttatgcctactatgtgctgggctggtggactt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gattgacagtgctcaggaaatgaacattttatgcctactatgtgctgggctggtgggctt 380
Query: 181 cagcttcattcataactgaaaggattctggctattgaggcttacatctcagtggagggac 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cagcttcattcataactgaaaggattctggctattgagggttacatctcagtggagggac 440
Query: 241 agatgtgatacaataaaggtagtggggggaatgggggagtcagggtgaatgcagatcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgtgatacaataaaggtagtggggggaatgggggagtcagggtgaatgcagatcaag 500
Query: 301 ggtgcaaaggtcactgacaagacaagatttgaaccaacacttgtaggatctttgggagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgcaaaggtcactgacaagacaagatttgaaccaacacttgtaggatctttgggagac 560
Query: 361 agggagcccttcctggaggcagtgctatgatggggcctgggttgggggtgggggtgtatt 420
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 agggagcccttcctgaaggcagtgctatgatggggcctgggttggggg-gggggtgtatt 619
Query: 421 t 421
|
Sbjct: 620 t 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 823
Length adjustment: 9
Effective length of query: 415
Effective length of database: 814
Effective search space: 337810
Effective search space used: 337810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
