Query= MSMg01no482_a15.b1 MSMg01no482_a15.b1 CHROMAT_FILE:
MSMg01no482_a15.b1 PHD_FILE: MSMg01no482_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:52 2005
(574 letters)
>mm_chr9_43684605_43685578
Length = 974
Score = 874 bits (452), Expect = 0.0
Identities = 571/668 (85%), Gaps = 94/668 (14%)
Strand = Plus / Plus
Query: 1 catagtgagaccctgtctcaaaccaaacacaataaacaaaatagtatggctgttgggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagtgagaccctgtctcaaaccaaacacaataaacaaaatagtatggctgttgggaat 260
Query: 61 caagtgttcaaacacaggagcctaaggcttattaaccttcccaaagagattccggctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtgttcaaacacaggagcctaaggcttattaaccttcccaaagagattccggctgag 320
Query: 121 cctatcaactgctctctgagggtctgctatcttaaagttgtctctatggagaaagatagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctatcaactgctctctgagggtctgctatcttaaagttgtctctatggagaaagatagc 380
Query: 181 ctttgctccccagtgttgcctccctttgcctgtggcttgttgccccctcctcccagaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgctccccagtgttgcctccctttgcctgtggcttgttgccccctcctcccagaggc 440
Query: 241 ctcaagtccccacttctttctttctttctttctttctttctttctttctttctttctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaagtccccacttctttctttctttctttctttctttctttctttctttctttctttc 500
Query: 301 tttctttctttctttctttctt------------------------tct------ctttc 330
|||||||||||||||||||||| ||| |||||
Sbjct: 501 tttctttctttctttctttcttccttccttccttccttccttcctttctttctttctttc 560
Query: 331 tttctttctttctttctctctctctctctctctct-----------------tccttcct 373
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tttctttctttctttctctctctctctctctctctcccttccttccttcctttccttcct 620
Query: 374 tccttccttccttcctt---tc---------ttccttcctttctttct---ctctct--- 415
||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct: 621 tccttccttccttccttccttccttccttccttccttcctttctttcttttctctctttc 680
Query: 416 ---------------------cttccttccttcctttctttagatttatttatttattta 454
|||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctctttctctttctttctttcttccttccttcctttctttagatttatttatttattta 740
Query: 455 ttta--------cttaatgtatatatgagtacactgtacctgtactgatggttgtgagcc 506
|||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 741 tttatttatttacttaatgtctatatgagtacactgtacctatactgatggttgtgcgcc 800
Query: 507 atcatgtagttgctgggaatttgagttcaggacctctactcacttctgtcggccctgcta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atcatgtagttgctgggaatttgagttcaggacctctactcacttctgtcggccctgcta 860
Query: 567 gtttcggc 574
||||||||
Sbjct: 861 gtttcggc 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 182
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_a15.g1 MSMg01no482_a15.g1 CHROMAT_FILE:
MSMg01no482_a15.g1 PHD_FILE: MSMg01no482_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:52 2005
(645 letters)
>mm_chr9_43816557_43817601
Length = 1045
Score = 1011 bits (523), Expect = 0.0
Identities = 529/531 (99%)
Strand = Plus / Minus
Query: 1 tctatgtagactaggttggcctcaaactcacagactgtcttgcatcccaggtgctaggat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 531 tctatgtagactaggttggcctcaaactcacagactgccttgcatcccaggtgctaggat 472
Query: 61 gaaaggccagcacttaccacacctggcttataagggaagctctccaattctcagtattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaaaggccagcacttaccacacctggcttataagggaagctctccaattctcagtattgt 412
Query: 121 gaggaaacaatgtctgatgaaaacaggttagagggggaaaggcttatgctttcgggttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaggaaacaatgtctgatgaaaacaggttagagggggaaaggcttatgctttcgggttat 352
Query: 181 cattgtggtgtgtggtgctaagaaaggctgtaggtgtaaaggcagaagtatggaccactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cattgtggtgtgtggtgctaagaaaggctgtaggtgtaaaggcagaagtatggaccactc 292
Query: 241 acaggtgcccatcttcctgcctttccttttttatccagctcagcccacagtccatggaac 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 acaggtgcccagcttcctgcctttccttttttatccagctcagcccacagtccatggaac 232
Query: 301 agagccacttatactcagatggcctttctttccttagttaagttctctgcaaagaccctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 agagccacttatactcagatggcctttctttccttagttaagttctctgcaaagaccctc 172
Query: 361 acggacacagcagagaggaatctcctaggcgattccaaattctgcagcccaaaccctgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 acggacacagcagagaggaatctcctaggcgattccaaattctgcagcccaaaccctgca 112
Query: 421 aacagaagtttaaggtcatccttaggtacatagctagtttctgcctgcctcggattgtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aacagaagtttaaggtcatccttaggtacatagctagtttctgcctgcctcggattgtga 52
Query: 481 gatcctgtctcaaagaaagaacaacaacaacaaaacaaactgataacagtg 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gatcctgtctcaaagaaagaacaacaacaacaaaacaaactgataacagtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
