XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
CCTTACTGCCCTGGGATTCTGGTGGGTTATAAACAGGCATAGATTCTCAT
ATCTTGCTCCTAAGTGATAACATGCTACAGTCAGATCCCTGCAAGGTAAA
TTTGTCCCTACAAATATTGTTTCATTTTCTCTGTTTTCACCACTGGGAAA
TTCCCTGCTTTGATACACAAACAGTTGTGACAGCATTCTAGACTCTTTCT
CCTGACCCTTGCCTCCCTGGGGAAGGAAGCTGTCTTCTTTCTTCCTGCTT
CCTGGTGGGAGTGTTCAGCAAGATGGGCTCGCAGAACCTAGGCTGGGCCG
TGCTCAGGTCAGATGCTACAGGGCATGTCCGTGGAAAAAGAAACAGGTGA
GACCATCAACACACACACACACACACACACACACACACACACACACACTT
AAAAAGAAAAAGTTAAACCCTCTCTACCCTGTAAACTAAGGTGTCCCTTG
ATGGTTTTCACCTATAGTACATACAAAGACTCAAATGAACTACTTTGATT
CAAGACATTTCTAAAACCAGAAGCCCAAAGTGAGGAGAGCATGACACTTG
AATTGATGTGTAGAGAGCCCCCCCCCCCTGCTATTCTTTCTTTTAGGACA
AGCATGAAAGCAACTGTGAAAACTGTCTTGAACCAGGCAAGCTGGACCTG
GCTGCCCGCCGGCAGGCGTCAACCCCTCATG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCTTCTTCGCTCTGTGAGGAC
ATTTCCTTTATAACCCACTGGATAATCCAGGATCACTTTCTCAAGTCAGG
ATGCAGCCCTTCATTAGACCTACAAAGTCCCTGATGCTATGTAAGACAAA
CACCCCTAGTTCTACAGATTTAGCCTGTATTTGGGGGTTGAAGACATAAT
CCAGCCTGTCACATCTGAACTCTTTTCTTTCTTTTTCTTTTTAAAGATTT
TGTTTTATATATATATACACACACATATATACACACACACATATATATGT
AAACGAGTACACTGTAGCTCTCTTCAGACACACCAGAAGAGGGCATCAGA
TCCCACTACAGATGGTTGTGAGCCACCGTGTGGTTGCTGGGAATAGGACC
TCTAGAAGAGCAGTCACTTCTCTTAACCACCGAGCCATCTCTCTAGCTCC
TGAACTCTTTTCTTATAAGATCTATTTTATTTTAAGATTTTGCATGTGTG
TCTGTGTACTACGTGAGTAACTGGTACTCTTGGATAGCTTGGGACTGCAG
TTATAGCAGATAGTTGTGAACTGACTTGTGAGTTCCTGAAATTGAACTTA
GGTCCTCTGGAGGAGCAGCTGGTACTCTAAACCACTGAACCGTCTCTCTA
GTCCCATATCTCTTGGTTTTTCTTC

Query= MSMg01no482_f07.b1 MSMg01no482_f07.b1 CHROMAT_FILE:
MSMg01no482_f07.b1 PHD_FILE: MSMg01no482_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:13 2005
         (526 letters)



>mm_chr9_53755933_53756858
          Length = 926

 Score =  942 bits (487), Expect = 0.0
 Identities = 519/541 (95%), Gaps = 20/541 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaccttactgccctgggattctggtgggttataaacaggcatagattctcatat 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattctaccctactgccctgggattctggtgggttataaacaggcatagattctcatat 511

                                                                       
Query: 65  cttgctcctaagtgataacatgctacagtcagatccctgcaaggtaaatttgtccctaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cttgctcctaagtgataacatgctacagtcagatccctgcaaggtaaatttgtccctaca 451

                                                                       
Query: 125 aatattgtttcattttctctgttttcaccactgggaaattccctgctttgatacacaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aatattgtttcattttctctgttttcaccactgggaaattccctgctttgatacacaaac 391

                                                                       
Query: 185 agttgtgacagcattctagactctttctcctgacccttgcctccctggggaaggaagctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agttgtgacagcattctagactctttctcctgacccttgcctccctggggaaggaagctg 331

                                                                       
Query: 245 tcttctttcttcctgcttcctggtgggagtg-ttcagcaagatgggctcgcagaacctag 303
           ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 330 tcttctttcttcctgcttcctggtgggag-gcctcagcaagatgggctcgcagaacctag 272

                                                                       
Query: 304 gctgggccgtgctcaggtcagatgctacagggcatgtccgtggaaaaagaaacaggtgag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gctgggccgtgctcaggtcagatgctacagggcatgtccgtggaaaaagaaacaggtgag 212

                                                                       
Query: 364 accatca------------------acacacacacacacacacacacacacacacacaca 405
           |||||||                  |||||||||||||||||||||||||||||||||||
Sbjct: 211 accatcaacacacacacacacacacacacacacacacacacacacacacacacacacaca 152

                                                                       
Query: 406 cacacttaaaaagaaaaagttaaaccctctctaccctgtaaactaaggtgtcccttgatg 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cacacttaaaaagaaaaagttaaaccctctctaccctgtaaactaaggtgtcccttgatg 92

                                                                       
Query: 466 gttttcacctatagtacatacaaagactcaaatgaactactttgattcaagacatttcta 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  gttttcacctatagtacatacaaagactcaaatgaactactttgattcaagacatttcta 32

            
Query: 526 a 526
           |
Sbjct: 31  a 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 24
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)