Query= MSMg01no482_i20.b1 MSMg01no482_i20.b1 CHROMAT_FILE:
MSMg01no482_i20.b1 PHD_FILE: MSMg01no482_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:29 2005
(477 letters)
>mm_chr9_75881573_75882450
Length = 878
Score = 901 bits (466), Expect = 0.0
Identities = 475/478 (99%), Gaps = 1/478 (0%)
Strand = Plus / Plus
Query: 1 aaaacaaaatgaagcatttagtggaagaattggaaaggtgttccttaaagaatggtaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaacaaaatgaagcatttagtggaagaattggaaaggtgttccttaaagaatggtaata 260
Query: 61 gagtctaatgttgctaacactggaccttactttttaatttttgcaacattattttgatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtctaatgttgctaacactggaccttactttttaatttttgcaacattattttgatag 320
Query: 121 tacgatttaattgctgtttcagttcctagtggtggatattgcttaagcacaatgatacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacgatttaattgctgtttcagttcctagtggtggatattgcttaagcacaatgatacat 380
Query: 181 ttattt-tttttttataaagttggctttagctacaactctgcttctcaatttgtggtact 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatttatttttttataaagttggctttagctacaactctgcttctcaatttgtggtact 440
Query: 240 ctgatcaatgttggcatcgcctcggtgaactgattagaaattacaattcacggacacagc 299
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ctgatcaatgttggcatcgccttggtgaactaattagaaattacaattcacggacacagc 500
Query: 300 ctggcctaaggaatcatcttctctggaactgacgctgggaagctgggttagcaaactctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggcctaaggaatcatcttctctggaactgacgctgggaagctgggttagcaaactctg 560
Query: 360 caggagatttggatgcatgttcagtgttaagaactccaatctgaaaagcccatgactaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggagatttggatgcatgttcagtgttaagaactccaatctgaaaagcccatgactaaa 620
Query: 420 aaccattatgatctacacaggaaacagctgggtacgtagaggtccaggtttgatgcgg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccattatgatctacacaggaaacagctgggtacgtagaggtccaggtttgatgcgg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 878
Length adjustment: 10
Effective length of query: 467
Effective length of database: 868
Effective search space: 405356
Effective search space used: 405356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_i20.g1 MSMg01no482_i20.g1 CHROMAT_FILE:
MSMg01no482_i20.g1 PHD_FILE: MSMg01no482_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:29 2005
(659 letters)
>mm_chr9_76039405_76040463
Length = 1059
Score = 955 bits (494), Expect = 0.0
Identities = 539/554 (97%)
Strand = Plus / Minus
Query: 17 tgagattctccaacagttttgtataaacagctcataggacatactagaggaggttggagc 76
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 554 tgagattctccaacagttttgtataaacagctcataggacacactagaagaggttggagc 495
Query: 77 tcatgtgtgtttctgtctgctgctattcccctgtcaccagtgataggtagttttccagag 136
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 494 tcatgtatgtttctgtctgctgctattcccctgttgccagtgataggtagttttccagag 435
Query: 137 ccagctgtctctacccgttgcccttagccttgcatctgttcagccctaaggagttgcttg 196
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 434 ccagctgtctctacccgtcacccttagccttgtatctgttcagccctaaggagttgcttg 375
Query: 197 tgtcttgtttcagctcctttctcttttattcactttgtcatgactctgctatctgagcat 256
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 374 tgtcttgtttcagctcctttcccttttatgcactttgtcatgactctgctatctgagcat 315
Query: 257 agatcaggtttttccattgggcacccaccacatccatgtcaaaactctacaagttctaat 316
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agatcaggtttttccactgggcacccaccacatccatgtcaaaactctacaagttctaat 255
Query: 317 catttttagaccttgagccaattcagaaacagttcactgtcttggttttgtttgatttgg 376
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 254 catttttagacctcgagccaattcagaaacagttcactatcttggttttgtttgatttgg 195
Query: 377 tttggtttgttgctttatgctgtccctcagtattttgaattttattcttctgatgatttt 436
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 194 tttggtttgttgctttatgctgtccctcaatattttgaattttattcttctgatgatttt 135
Query: 437 tcaacatttgccttataggcttatccaattatgcagttcatagtgctcagggatgggtct 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tcaacatttgccttataggcttatccaattatgcagttcatagtgctcagggatgggtct 75
Query: 497 atactaatggaagtctgaattctcctgcatgattgcatccatggtgactacatcatcttt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 atactaatggaagtctgaattctcctgcatgattgcatccatggtgactacatcatcttt 15
Query: 557 gggatgtcagtact 570
|||| |||||||||
Sbjct: 14 gggacgtcagtact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
