BAC Information

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BAC

Clone NameMSMg01-482N14
Chromosome9 (Build37)
Map Location 82,178,749 - 82,178,983
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039038, Htr1b, LOC671392, 4930486G11Rik, LOC100039085
Downstream geneIrak1bp1, Phip, LOC100039144, Hmgn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482N14.T7 (MSMg01no482_n14.b1)MSMg01-482N14.TJ (MSMg01no482_n14.g1)
ACCAG562916AG562917
length737746
length of high quality
(start - end)
610 (37 - 646)239 (71 - 309)
definitionCHROMAT_FILE: MSMg01no482_n14.b1 PHD_FILE: MSMg01no482_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:50 2005CHROMAT_FILE: MSMg01no482_n14.g1 PHD_FILE: MSMg01no482_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTC
CCTCTGCAGCCAGACATGGCAGCACTATGTGTCTGGGCCTCCCTCCAGAC
CAGGTGTGTTCTTTGGTTGGTCTCTGAGAGCTGCCATGGATACAGGCTTG
TTGACTCTGTTGGTCTTCCTGTGGAGTTCCTATCCCCTTCAGGGCCTTCA
ATCCTTCCCCCAGCACTTTCATAAGAGTCCCCAACCTTCATCCAATGTTT
GGCTGTGGGTATCTGCATCTGTTTCAGTCAGCTGATATGTAGAGCATCTC
AGAGGACAATTATGCTAGGCTCCTGTCTGCAAGCATAGCAGAGTATCATT
AATAATGCCAGGGATTGGTGTTTGCCCATGGGATGGGTCTCAGGTAGGGT
TGGTTATTGGTCAGTCCTTGTTTCAGTCTCTGCTTCATCTTTGTCCTTGC
ATTGTTTTAGACGGGACAAATTTTGGGCTGAAAGTTTTGTGGGTGGGTTG
ATGTCCCTATTGCTGCACTGGGGTTTTGCCTGGCTAAAAACGGTGGCCTC
TTCTGGTTTCATGTCCCCACTGTTAGGCATCACAGCTAAGGTCACCCACA
TTGACTCCTGGGAGCATCTTCCATCCCAGGTCTCTGGGGCTTCCTAGAGA
CTTCCCCAACCCACCACGCTCCCAGNAGATGCAGATTTCCACTCATTCTT
CTATCCCTTTGGCCCTCTCTTCTGTCTCTTCCCACAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCAGGAATTCCTAATCCTTTTCCTTCCATACCCACT
CCCTGCTTAGACCCTTCTGTACCCAATATTCTTCCTCTTAGTTTCACTTC
TAGTCTACTATCCCATTTCCCATGGTGGCCAATGGACGCTTTATTAGTTA
CTAGTCTGTTGCTGTAATAATAATAATAATAATAATAATAATAATAATAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
GTAAANNTNNNNNNNNNTNTTTTTTTTTTNNTGGNNNGAANAAAGANAGG
ATAAAAAGNTTATTTTGGTTTAGTTTNTAGGAGAGTGGATAATTATAAGG
GAAATATGATAGTGGGNACCCCCACAATGAAACTGAGAGCTTGTTTTATC
AACTATGTGCAGTAAAAAACTGGAGCAAATTGGCAGGCTACTCTGAATGT
TGTACTTCTTCTTGCTAGGCTGCACCTCTCAAAGCAGTGGTTTTTAATCT
TCCTAGTACTGATCCTCATGTTGTCTCTACCACAAAATTGTTTTGTTGGT
ATTTCATAACTATAATTTGTTATTATTACGGCTTAGTGTAAATATTTGCT
CTGCTATTATATCTTTTTTGTTCTAGAAGGACTTGGGACCAATAGGTTGA
TAACCTCTGTAGGTTTGATTACCTCCTAAACTTTCCTCTGCTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_n14.g1 MSMg01no482_n14.g1 CHROMAT_FILE:
MSMg01no482_n14.g1 PHD_FILE: MSMg01no482_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:50 2005
         (239 letters)



>mm_chr9_82178549_82179187
          Length = 639

 Score =  408 bits (211), Expect = e-118
 Identities = 229/235 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctaatccttttccttccatacccactccctgcttagacccttctgtacccaatatt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcccaatccttttccttccatacccactccctgcttagacccttctgtacccaatatt 260

                                                                       
Query: 61  cttcctcttagtttcacttctagtctactatcccatttcccatggtggccaatggacgct 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctcttagtttcacttctagtctactatcccatttcccatggtggccaatggacgct 320

                                                                       
Query: 121 ttattagttactagtctgttgctgtaataataataataataataataataataataatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ttattagttactagtctgttgctgtaataataataataataataataataataataataa 380

                                                                  
Query: 181 tagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtaaa 235
           || || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 taataatagtagtagtagtagtagtaatagtagtagtagtagtagtagtagtaaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)