BAC Information

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BAC

Clone NameMSMg01-482O01
Chromosome9 (Build37)
Map Location 10,712,322 - 10,712,556
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482O01.T7 (MSMg01no482_o01.b1)MSMg01-482O01.TJ (MSMg01no482_o01.g1)
ACCAG562938AG562939
length762650
length of high quality
(start - end)
140 (176 - 315)235 (96 - 330)
definitionCHROMAT_FILE: MSMg01no482_o01.b1 PHD_FILE: MSMg01no482_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:52 2005CHROMAT_FILE: MSMg01no482_o01.g1 PHD_FILE: MSMg01no482_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATAATTTGCGGCCGCCAAACCAACCCCATAGGCTATTGCTGCGCNGG
AANCCCCTGATGAATCTATTTGCGGGNNNNAGANCCNGGANGGNTTTGTT
CAATTCCTTCACTTCTTTGCCTGTGTTTTACCGCAACTCTTTAAGAGATT
TTTGTGTTTCCTCTTTAAGTGCTTCAAACTGTATACTTGTGTTCTCCTGT
ATTTCTTTAAGGGAGTTATTTATCTCCTTGTTAAATTCCTCTATCATCTT
TATGAGATGTGATTTTAAATCTGAGTCCTTTTCTGGTGTGTTGGGGTATC
CACTTCTCACTGTGTTTTTTTATTTGGGATCTAAGGATGCCAAGCAGCCC
TGGATTCTGTTGCTTATGCTCTTGACCCTGTCGCTCGACATCTGGTTATC
TCTGCTGTTAGCCCGGCCCTGTTATCTTTGACAGGGGATTGTCCCCTCCT
GCAAGCCTGTATGTCAGACCTTCTAGGAAATCAGCTCCTCTCTGGGAGGA
ATTTGGTCATACACAGTTGTGGCATATGGTCAGCTCCAGGGTGCAGACAG
TAACTGGAAAGATCCTGTTCCTCCGTTGCCCTTCGCTTCTTGTGCCCTGA
TGCCTCGCGGAGGGCCCCTCTTGGGCCCACGAATTTGATCCCAAGCGGTG
GTCCTTACCTGAGTTTACAAGCGAGCCACCCCCCTGCAAAACTAACCCTC
TCCCAGCACGTCTTGCCCATGGCTCATTGAGGCCCAGGATCTCCTCCCCT
CTTAGAATGAAG
CGGGCCCTTAACCGGATTGAANNANCCCGGANNNTCGAAGGTTTGGAGAG
NAACNNACCNAACTCTGCCCTTTCTTTACCATTTATTCCCAAATGCAGAT
GATAAGAACAGATGTGTCAAAATCTTGATGTGTTCAGTACAATAAAAAAG
ACAAAGTAAGTATTTAGTAACTGTGATAATTAATTGGCAAAGGAAACCAA
ACTTTATCAGGAGTACTGAAAGACACAACAGTGTAATTATTACTACAAAT
CATTGAGCATTAATTACATGCCAGGAATATTCTAATTTTTTAAAAAGATT
ATGACATTATTCAAAATTCAAAATATTTCTTATTACAGATAACATTTCCT
CTTTTATATGTGAAGTTACTGAGGTGAAAATTTAATATATCAAATCTAAT
ATTTAAGACATTAATATTTAACCCAAGAGAAAAATAATTCAGGTACTTAC
TTTAACTCTATTCAAGTTTTTAGAGTTGTGATGAAAGAATGTTGCAGGGA
TGGGCAGTATGACTCANATCTCTGTGAATTAGAAACCCAGCTAGACATAC
CTTCTAAAGCACAGTTACACATTATGCCTTTAGACAGACTGATAATATAT
ACCACCCCCAAAATGGTGCTTAATGTGGTTGAGCAGCATGCTAATTTAGN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_o01.g1 MSMg01no482_o01.g1 CHROMAT_FILE:
MSMg01no482_o01.g1 PHD_FILE: MSMg01no482_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:52 2005
         (235 letters)



>mm_chr9_10712122_10712756
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatgataagaacagatgtgtcaaaatcttgatgtgttcagtacaataaaaaagacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cagatgataagaacagatgtgtcaaaatcttgatgtgttcagtacaataaaaaagacaaa 376

                                                                       
Query: 61  gtaagtatttagtaactgtgataattaattggcaaaggaaaccaaactttatcaggagta 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 375 gtaagtatttagtaactgtgataattaattggcaaaggaagccaaactttatcaggagta 316

                                                                       
Query: 121 ctgaaagacacaacagtgtaattattactacaaatcattgagcattaattacatgccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctgaaagacacaacagtgtaattattactacaaatcattgagcattaattacatgccagg 256

                                                                  
Query: 181 aatattctaattttttaaaaagattatgacattattcaaaattcaaaatatttct 235
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aatattctaattctttaaaaagattatgacattattcaaaattcaaaatatttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)