Query= MSMg01no483_e19.b1 MSMg01no483_e19.b1 CHROMAT_FILE:
MSMg01no483_e19.b1 PHD_FILE: MSMg01no483_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:27 2005
(481 letters)
>mm_chr9_91057240_91058118
Length = 879
Score = 789 bits (408), Expect = 0.0
Identities = 457/474 (96%), Gaps = 5/474 (1%)
Strand = Plus / Plus
Query: 5 gaattctcaagttttatgcatctagaatgtttaagggaagatttttttaaatggaggcta 64
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctcaagttttatgcatctagaatgtttaagggaagatttttt--aatggaggcta 262
Query: 65 ttatcatattactacaagaaaatggttatctagcaaaatttccaaagaacataacatact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttatcatattactacaagaaaatggttatctagcaaaatttccaaagaacataacatact 322
Query: 125 tcaacaatgtagcaatttatgaagcataatttgggaaaatgtcttcagattcttttttta 184
||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct: 323 tcaacaatgtagcaatttatgaaacataatttgggaaaatgacttcagattcatttttta 382
Query: 185 ttgttgattttatttatttacatttctaatgttattccctttcccagttctcatccacaa 244
||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 383 ttggtgattttatttatttacaattctaatgttattccctttcccagttctcctccacaa 442
Query: 245 cacccctatcctctccccctgcctctatgagggtgctcccccacctgcccactcctgctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cacccctatcctctccccctgcctctatgagggtgctcccccacctgcccactcctgctt 502
Query: 305 ctgcatgctagcattcccctaagctgggtcattgagcttccacaggaccaaggggctcgc 364
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 503 cagcatgctagcattcccctaagctgggtcattgagcttccacaagaccaaggggctccc 562
Query: 365 ctcctattgatgccaaataaggccatcctctactatatatccagctggatccaggggtct 424
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 563 ctcctattgatgccaaataaggccatcctctgctatatatccagctggagccaggggtct 622
Query: 425 ccc-atgtgtactgtttggttga-aggtttagtctctaggagcttttggagggt 476
||| ||||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct: 623 ccccatgtgtactgtttggttgatag-tttagtctctaggagtttttggagggt 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 879
Length adjustment: 10
Effective length of query: 471
Effective length of database: 869
Effective search space: 409299
Effective search space used: 409299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_e19.g1 MSMg01no483_e19.g1 CHROMAT_FILE:
MSMg01no483_e19.g1 PHD_FILE: MSMg01no483_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:27 2005
(495 letters)
>mm_chr9_91101443_91102337
Length = 895
Score = 949 bits (491), Expect = 0.0
Identities = 494/495 (99%)
Strand = Plus / Minus
Query: 1 acctcacacattcttctagctgatgaggaagtttgctcttcctctccattagtacagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 acctcacacattcttctagctgatgaggaagtttgctcttcctctccattagtacagtgg 636
Query: 61 cttggatgcttctactcagcgagcatccagacatttgcctacaatatttttcttcttcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cttggatgcttctactcagcgagcatccagacatttgcctacaatatttttcttcttcag 576
Query: 121 agattatgtttctttaagtagctacctagagcccactccacagtgaggactcttagcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agattatgtttctttaagtagctacctagagcccactccacagtgaggactcttagcata 516
Query: 181 agtccgaacaaacagaaatgtttgagggtgatgataacacctagtttgcatctcaaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agtccgaacaaacagaaatgtttgagggtgatgataacacctagtttgcatctcaaatgc 456
Query: 241 aggtgaaaacatatgagaatgctacttatcattttcaaaaggtatctggaaattgtttga 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agttgaaaacatatgagaatgctacttatcattttcaaaaggtatctggaaattgtttga 396
Query: 301 aggatagtagctaacttaggaaaagcatcctctttaatatgctatttgagaaacacacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aggatagtagctaacttaggaaaagcatcctctttaatatgctatttgagaaacacacca 336
Query: 361 aacattcttgattttagcccttttaattaatgtttggacaaagaagtcaaagagtgaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aacattcttgattttagcccttttaattaatgtttggacaaagaagtcaaagagtgaaaa 276
Query: 421 gcacaggtacatgcaatatctttctctaccaccagtttcctccctgagaagcagttcttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcacaggtacatgcaatatctttctctaccaccagtttcctccctgagaagcagttcttg 216
Query: 481 taaatacatctaaga 495
|||||||||||||||
Sbjct: 215 taaatacatctaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
