BAC Information

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BAC

Clone NameMSMg01-483O18
Chromosome9 (Build37)
Map Location 94,165,869 - 94,166,232
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967
Downstream geneEG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483O18.T7 (MSMg01no483_o18.b1)MSMg01-483O18.TJ (MSMg01no483_o18.g1)
ACCAG563734AG563735
length784775
length of high quality
(start - end)		365 (49 - 413)616 (78 - 693)
definitionCHROMAT_FILE: MSMg01no483_o18.b1 PHD_FILE: MSMg01no483_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:18 2005CHROMAT_FILE: MSMg01no483_o18.g1 PHD_FILE: MSMg01no483_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTATATTCAAAAAAAGTGCAAGCTGTTTTGGCTACATTTTGT
AAAGCCAGAATGCCGTATCCTCTCATGGGATGCTTTCACAGATGAGTAGC
TAGTGTTTGGGAAGATGTTCCTTTAGATGCTATTCTTTGTAGCAATAATG
TGTGTGACCAAGCTAACTACATAGCTACAGTCAGATGTACCAACATTTCT
CATTAACGTTCTTGGTTTAAATGCACAGTACACTAGAACTTCAAACAATT
TAGAGTAGTTCCCAGCATTGCTTTGCCTCAAGATTATTGCACTTTGAGAA
ATGACCTTTTAACTTGACAGTAGGATGTGCAGCACATTCAGAATTCTTGT
CTATCTTTTACGGCAGGCAGCGGATTAAGGAAAGCCTGGAGATCTGGAAT
TTTTCACTCAAATTCACATCAGAAACACTCTTATCAGAAGTATAGCGTGT
AGCCCAGTAGAAGAACAATTGCCGGGGTTCAGTCCCCAGCACCAAATAAA
GAATATAAAAAATAGTAGCATGCTGTGACATGGAGAATTGTGTACAGAGA
ATTTAATGAGAAGTAAATTTGGTACAACCTCTGTGGGAAGTGAAGGGAGC
AGAACTGTCAGTGGGCAAATGGCTTCTGTATGTGTCAAGGATCTTTTCGT
TGTGAGTGGTACAAGGGAGTTTTCCTCCCAGGTTATTCTGAACGATATAA
CAGGACTGAGTCTTTGTACCTTGACACCACCAGT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTTCATG
GGCATCTCTTTCTTTAGGTTTGGGAAGTTTTCCTATATTTTTGTTGAAGA
TTTTGCTGGCCCTTTAGGTTGAAAATCTTCATTCACATCAACTCCTGTTA
TCTGTAGGTTTGGTCTTCTCATTCTATCCTGGATTTCCTGGATGTTTTGA
GTTAAGATCTTTTTGCATTTTGCATTTTCTTTGATTGTTATGCTGATGTT
CTCTATGGAATCTTCTGCCCCTGAGATTCTCTCTTCCATCTCTTGTATTC
TGTTGCTGATGCTCGCATCTATGGTTCCAGATTTCTTTCCTAGGGTTTCT
ATCTCCAGCGTTGCCTCACTTTGGGTTTTCTTTATTGTGTCTACTTCCCT
TTTCAGGTCTAGTATGGTTTTGTTCATTTCCATCACCTGTTTGGATGTCT
TTTCCTGTTTTACTTTAAGGACTTCTACCTGTTTGGTTGTGTTTTCCTGT
TCTTCTTTAAGGACTTTGAACTCTTTAGCAGTGTTCTCCTGTATTTCCGT
AAGTGAGTTATTAAATCCTTCTTTATGTCCTCTACTATCATCATGAGATA
TGCTTTTAAATCCAGGTCTTCCTTTTCGTGTGTGTTGGGGTATCCAAGAC
TGGGGGGAGATGGGAGTGCCTTGTTCTGATGATGGGGAGTGGTCTTGGTT
TTTGGGTAGNAAAATTCTTATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_o18.b1 MSMg01no483_o18.b1 CHROMAT_FILE:
MSMg01no483_o18.b1 PHD_FILE: MSMg01no483_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:18 2005
         (365 letters)



>mm_chr9_94165666_94166432
          Length = 767

 Score =  638 bits (330), Expect = 0.0
 Identities = 355/364 (97%), Gaps = 2/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttata--ttcaaaaaaagtgcaagctgttttggctacattttgtaaagccaga 61
           ||||||||||||  || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 567 ggaattcttataccttaaaaaaaagtgcaagctgttttggctacgttttgtaaagccaga 508

                                                                       
Query: 62  atgccgtatcctctcatgggatgctttcacagatgagtagctagtgtttgggaagatgtt 121
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 507 atgccgtatcctctcatgggatgctttcacagatgaatacctagtgtttgggaagatgtt 448

                                                                       
Query: 122 cctttagatgctattctttgtagcaataatgtgtgtgaccaagctaactacatagctaca 181
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cgtttagatgctattctttgtagcaataatgtgtgtgaccaagctaactacatagctaca 388

                                                                       
Query: 182 gtcagatgtaccaacatttctcattaacgttcttggtttaaatgcacagtacactagaac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtcagatgtaccaacatttctcattaacgttcttggtttaaatgcacagtacactagaac 328

                                                                       
Query: 242 ttcaaacaatttagagtagttcccagcattgctttgcctcaagattattgcactttgaga 301
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 327 ttcaaacaatttagagtagttcccagcattgcaatgcctcaagattattgcactttgaga 268

                                                                       
Query: 302 aatgaccttttaacttgacagtaggatgtgcagcacattcagaattcttgtctatctttt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatgaccttttaacttgacagtaggatgtgcagcacattcagaattcttgtctatctttt 208

               
Query: 362 acgg 365
           ||||
Sbjct: 207 acgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 767
Length adjustment: 9
Effective length of query: 356
Effective length of database: 758
Effective search space:   269848
Effective search space used:   269848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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