Query= MSMg01no484_i04.b1 MSMg01no484_i04.b1 CHROMAT_FILE:
MSMg01no484_i04.b1 PHD_FILE: MSMg01no484_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:06 2005
(666 letters)
>mm_chr9_90947584_90948649
Length = 1066
Score = 1239 bits (641), Expect = 0.0
Identities = 660/667 (98%), Gaps = 4/667 (0%)
Strand = Plus / Plus
Query: 1 tattttatgaaaatagttataaactatatatagaacagttcactagaaaaaattcacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tattttatgaaaatagttataaactatatatagaacagttcactagaaaaaattcacata 258
Query: 61 tatatatgaatatgtctgtatatat--gtgagaataaacttttatggg-agaagcaaaca 117
||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||
Sbjct: 259 tatatatgaatatgtctgtatatatatgtgagaataaacttttatgggta-aagcaaaca 317
Query: 118 taaaatgcactttctaaatatagtttagaaaataacggtggctaaactttaaaaatgcaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taaaatgcactttctaaatatagtttagaaaataacggtggctaaactttaaaaatgcaa 377
Query: 178 ggaaaattatatgggcttgttttgcttaatttataaagacatatactcaggtttgggaag 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggaaaattatatgggcttgttttacttaatttataaagacatatactcaggtttgggaag 437
Query: 238 cactaattaaggcacagtgacatgtttaatgaggtgggattcacaggatcgttaaccaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cactaattaaggcacagtgacatgtttaatgaggtgggattcacaggatcgttaaccaaa 497
Query: 298 ctgaaatggtggaagagtgggagagtttgctgctaaaaacttcttccctggaggagctgg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgaaatggtggaagagtgggagagtttgctgctaaaaacttcttccctggaggagctgg 557
Query: 358 aacagtgtccctcctcccatggttctaacagctaataggcacaattctaccgaagttctc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacagtgtccctcctcccatggttctaacagctaataggcacaattctaccgaagttctc 617
Query: 418 tctagggaactaatggatgtattaggctttcttacagagcctaggtaaggagttgcctac 477
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 618 tctggggaactaatggatgtattaggctttctcacagagcctaggtaaggagttgcctac 677
Query: 478 agggatgtgggcactctctccccagcaggggtgagggcttcctggtacccacagagatgg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agggatgtgggcactctctccccagcaggggtgagggcttcctggtacccacagagatgg 737
Query: 538 agacactgctctggtcttttccaaccaatatagtctggcccctcccacagaccacctgca 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agacactgctctggtcttttccaaccaatatagtctggcccctcccacagaccacctgca 797
Query: 598 gtgttatcaggcaggaaggatcagttggatattctggttagcttgtgacagaccccaagc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gtgttatcaggcaggaaggatcagttggatattctggttagcttgtgacagaccccaagc 857
Query: 658 tctgtac 664
|||||||
Sbjct: 858 tctgtac 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_i04.g1 MSMg01no484_i04.g1 CHROMAT_FILE:
MSMg01no484_i04.g1 PHD_FILE: MSMg01no484_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:06 2005
(627 letters)
>mm_chr9_90996879_90997906
Length = 1028
Score = 818 bits (423), Expect = 0.0
Identities = 453/465 (97%), Gaps = 5/465 (1%)
Strand = Plus / Minus
Query: 164 gactgggtgatgatttcaatggaaggggagatggaaaggactttatggagttgtggagtg 223
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1028 gactgggttatgatttcaatggaaggggagatgggaaggactttatggagttgtggagtg 969
Query: 224 ggaaactaaaatatgcattgtatgaaaaatattctattttcaacaacaagaaaaagaaaa 283
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 968 ggaaactaaaatatgcattgtatgaaaaatattctatttttaacaacaagaaaaagaaaa 909
Query: 284 tcttaccactaattttataatgttttattaaatacagcagatggcacgtacaagagtata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tcttaccactaattttataatgttttattaaatacagcagatggcacgtacaagagta-- 851
Query: 344 tttatttattatttaaaataaaaaccaaaatcagaatcaaactttttcagataaaaataa 403
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 850 --tatttattatttaaaataaaaaccaaaatcagaaccaaactttttcagataaaaataa 793
Query: 404 aaagaatcagggggtgcaaggaatatgtacaatagtgtacacactttttatttgaagctt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aaagaatcagggggtgcaaggaatatgtacaatagtgtacacactttttatttgaagctt 733
Query: 464 tgtgaaatttgtcattgagtaaagaacttttgtgtgtttcgacagtgctatgaataataa 523
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 732 tgtgaaatttgtcattgagtaaagaatttttgtgtgtttcgacagtactatgaataataa 673
Query: 524 tttataatacagtggtt-aaaaaagactatttcttttttaaacaattgcttttttcccaa 582
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 672 tttataatacagtggtttaaaaaagactatttcttttttaaacaatggcttttttcccaa 613
Query: 583 acctgactgccttttattcaaagatgttgttaaagctattgggac 627
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acctgactgccttttattcaaagatgttgttaaagctattgggac 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space: 628106
Effective search space used: 628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
