Query= MSMg01no485_g17.b1 MSMg01no485_g17.b1 CHROMAT_FILE:
MSMg01no485_g17.b1 PHD_FILE: MSMg01no485_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:22 2005
(658 letters)
>mm_chr9_79306998_79308055
Length = 1058
Score = 1110 bits (574), Expect = 0.0
Identities = 646/694 (93%), Gaps = 40/694 (5%)
Strand = Plus / Plus
Query: 1 aatggactgaggaaaagaacagatggctctcaaaagatgcaacacaagtggttaaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aatggactgaggaaaagaacagatggctctcaaaagatgcaacacaagtggttaaaacaa 234
Query: 61 atgaaaaaaattcaacctcactattggaaatgtaaactcaaaatgcattaacattccacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 atgaaaaaaattcaacctcactattggaaatgtaaactcaaaatgcattaacattccacc 294
Query: 121 ttaccctagtcagaatggcagtcattgagaatggaaaagagaacaaattttagtgaggac 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 295 ttaccctagtcagaatggcagtcattgagaatggaaaagagaacaaatttcagtgaggac 354
Query: 181 gggaacaaaggtgcccttgtacattgctggtgggggtgtaaactagtcctgccacagcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gggaacaaaggtgcccttgtacattgctggtgggggtgtaaactagtcctgccacagcag 414
Query: 241 aagtcagttgttttg----tcttcaaatactaaaaatatatctaacatatgaccatgagg 296
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaatcagttg----gagagtcttcaaatactaaaaatatatctaacatatgaccatgagg 470
Query: 297 aatagaaggtgaggaacatatgggcaggtatactcaatgtacagtgtatgcttatataaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aatagaaggtgaggaacatatgggcaggtatactcaatgtacagtgtatgcttatataaa 530
Query: 357 gatgtctttatgtagcacagcactatgtgcaatgaatacatgcaatgaaaaatttaaaac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gatgtctttatgtagcacagcactatgtgcaatgaatacatgcaatgaaaaatttaaaac 590
Query: 417 taaatagaattaactgattacctatttagtaagtatatcctgagagccattggagatata 476
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 591 taaatagaattaactgattacctatttagtaagtacatcctgagagccattggagatatt 650
Query: 477 tatgtcatatgtatatgtgtgtgtatatatatatatatatata----------------- 519
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 651 tatgtcatatgtatatgtgtatatatatatatatatatatatatatatatatatatatat 710
Query: 520 ---------cctgtgtgctaaggtctgaagatttaaagatcataagatcatggaggcaca 570
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 711 atatacacacctgtgtgctaaggtctggagatttaaagatcataagatcatggaggcaca 770
Query: 571 gtgagtatatagtaaagaaatacggtcttaaaatttccttgacgtacagaagcatatgtc 630
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 771 gtgagtatatagtaaagaaatacggtcttaaaatttccttgacgtatagaagcatatgtc 830
Query: 631 tttatgacatctcctga------agctcaatgtt 658
||||||||||||||||| |||||||||||
Sbjct: 831 tttatgacatctcctgacatcctagctcaatgtt 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_g17.g1 MSMg01no485_g17.g1 CHROMAT_FILE:
MSMg01no485_g17.g1 PHD_FILE: MSMg01no485_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:22 2005
(571 letters)
>mm_chr9_79448906_79449873
Length = 968
Score = 1064 bits (550), Expect = 0.0
Identities = 565/572 (98%), Gaps = 5/572 (0%)
Strand = Plus / Minus
Query: 1 actgtcatgcgccagccgtagaattgctgcttatcaaatctgtagcttaatatttttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 actgtcatgcgccagccgtagaattgctgcttatcaaatctgtagcttaatatttttata 601
Query: 61 gggctgttagtgaaattctagtgttgcacagttgtagactgcagacgcatgtcatgcctg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 600 gggctgttagtgaaattctagtgttgcacagttgtagactgcagacgcatctcatgcctg 541
Query: 121 accttgggggatgtgagaactgggg-gtatactggtctggatagaaagactctcatgtca 179
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 540 accttgggggatgtgagaactggggtgtatactggtctggatagaaagactctcatgtta 481
Query: 180 tgatcaatggttagtttttcattagtgcatcctcatgcatcttgcaagtttaaaaaatga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgatcaatggttagtttttcattagtgcatcctcatgcatcttgcaagtttaaaaaatga 421
Query: 240 tactgctgtttgatatggtttgctactagcaagtagtgcatgagtagttggatatatcaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tactgctgtttgatatggtttgctactagcaagtagtgcatgagtagttggatatatcaa 361
Query: 300 tatctatatatctatatatttatgtgcataactatatgtgatcaaaagtagtaatgaatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tatctatatatctatatatttatgtgcataactatatgtgatcaaaagtagtaatgaatc 301
Query: 360 caaatgcataatcccatgtaatctatttgcaagactataaataatttaattatttgtaaa 419
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 300 caaatgcataatcccatgtaatctatttgcaagact----ataatttaattatttgtaaa 245
Query: 420 gcaaatttaaattatccctgccttatggcatttgtgaactgaaaatatatggatatataa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcaaatttaaattatccctgccttatggcatttgtgaactgaaaatatatggatatataa 185
Query: 480 atatacatactttaacatttacatagatggatgtgtatatatatatatatatatttgcat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atatacatactttaacatttacatagatggatgtgtatatatatatatatatatttgcat 125
Query: 540 agtaattcaacttttaaaaactatcatctttg 571
||||||||||||||||||||||||||||||||
Sbjct: 124 agtaattcaacttttaaaaactatcatctttg 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 968
Length adjustment: 10
Effective length of query: 561
Effective length of database: 958
Effective search space: 537438
Effective search space used: 537438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
