Query= MSMg01no485_h24.b1 MSMg01no485_h24.b1 CHROMAT_FILE:
MSMg01no485_h24.b1 PHD_FILE: MSMg01no485_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:28 2005
(471 letters)
>mm_chr9_93549303_93550172
Length = 870
Score = 857 bits (443), Expect = 0.0
Identities = 461/467 (98%), Gaps = 1/467 (0%)
Strand = Plus / Minus
Query: 5 ggaattcttctctggttctagcagatatcctgttgggaggagatagaaacatagtacaat 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggaattcttctctggatatagcagatatcctgttgggaggagatagaaacatagtacaat 611
Query: 65 agaaactgctggaattatttttctattaagcaaattcaaatgatctgaggaaagaggttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 agaaactgctggaattatttttctattaagcaaattcaaatgatctgaggaaagaggttt 551
Query: 125 caatattagatgacttgagagaggaagtggtttgtagtaggtcaggaaaaggatcagaga 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 caatattagatgccttgagagaggaagtggtttgtagtaggtcaggaaaaggatcagaga 491
Query: 185 agaggagtgaaaaccaatgtcatgatcttagagcctaaccttccttttcctaaacaataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agaggagtgaaaaccaatgtcatgatcttagagcctaaccttccttttcctaaacaataa 431
Query: 245 gatttacattgttgttctaggacatttctacaattctacacatgcagtatagctgtgttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gatttacattgttgttctaggacatttctacaattctacacatgcagtatagctgtgttt 371
Query: 305 tccatggatataataattaacattcatagaaaccaagtgtaaatgggccatcaaatgata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tccatggatataataattaacattcatagaaaccaagtgtaaatgggccatcaaatgata 311
Query: 365 cattttccagtgaccatttgaaggattttcatgtacagaaaaaaaaatgtcaccatgaat 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 310 cattttccagtgaccatttgaaggattttcatgtacag-aaaaaaaatgtcaccatgaat 252
Query: 425 gttcatttatatagaatctcttagattggtggacacatattttgatg 471
||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 251 gttcatttaaatagaatctcttagattggtggacacatatttcgatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_h24.g1 MSMg01no485_h24.g1 CHROMAT_FILE:
MSMg01no485_h24.g1 PHD_FILE: MSMg01no485_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:28 2005
(464 letters)
>mm_chr9_93374619_93375482
Length = 864
Score = 793 bits (410), Expect = 0.0
Identities = 452/466 (96%), Gaps = 3/466 (0%)
Strand = Plus / Plus
Query: 1 tagagcttaagctccagtgagctctggatgtcctggaactcactctgtagaccaggctgg 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tagagcttaagatccagtgagctctggatgtcctggaactcactctgtagaccaggctgg 259
Query: 61 cctcgaactcagaaacctgcctgcctctgcctcccaagtgctggggttaaaggcgtgcac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 260 cctcgaactcagaaacctgcctgcctctgcctcccaagtgctggggttaaaggcatgcac 319
Query: 121 caccattgcctggctacacacaccgctctttagaattaacttctatattcctaacaacat 180
|||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 caccattgtctggctacgcacaccgttctttagaattaacttctatattcctaacaacat 379
Query: 181 gaatatgcaataactggtttaagaaaagactctgaacttgtcataagtaa-agttcatgt 239
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 380 gaatatgcaataactggtttaaggaaagactctgaacttgtcataagtaata-ttcatgt 438
Query: 240 tcatagctgacaagaacaacagcaacaaccgaaaaaaagataaacaaaacaacaacaata 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcatagttgacaagaacaacagcaacaaccgaaaaaaagataaacaaaacaacaacaata 498
Query: 300 aaaaa-acctgagtttgagcaagttataatctttctgtagctatgcctgagtgtcatgca 358
||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaaataactgagtttgagcaagatataatctttctgtagctatgcctgagtgtcatgca 558
Query: 359 tcagcgcttcctcaccacagatatccatgtttatatcactacacagtgtgaagacttaaa 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcagtgcttcctcaccacagatatccatgtttatatcactacacagtgtgaagacttaaa 618
Query: 419 agtagcagtcacacaaccatctcggggataaggctataacaatcca 464
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 619 agtagcagtcacacaaccatctctgggataaggctataacaatcca 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
