Query= MSMg01no486_b03.b1 MSMg01no486_b03.b1 CHROMAT_FILE:
MSMg01no486_b03.b1 PHD_FILE: MSMg01no486_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:15 2005
(198 letters)
>mm_chr9_4712905_4713501
Length = 597
Score = 368 bits (190), Expect = e-106
Identities = 193/194 (99%), Gaps = 1/194 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagttcttttatacgaatactgttgtacaggtgtttgcatgcatttgtgttcat 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggaattcagttcttttata-gaatactgttgtacaggtgtttgcatgcatttgtgttcat 338
Query: 64 gcatgttcacatgaatgttaaagctttatttcaggtatttgttgttagtttcagtgtaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcatgttcacatgaatgttaaagctttatttcaggtatttgttgttagtttcagtgtaaa 278
Query: 124 gcaaccataattttaaccttctcaaatagacttaaatgatgtaaggaaatcagcaatgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcaaccataattttaaccttctcaaatagacttaaatgatgtaaggaaatcagcaatgaa 218
Query: 184 ggctgcacctttac 197
||||||||||||||
Sbjct: 217 ggctgcacctttac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 597
Length adjustment: 8
Effective length of query: 190
Effective length of database: 589
Effective search space: 111910
Effective search space used: 111910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no486_b03.g1 MSMg01no486_b03.g1 CHROMAT_FILE:
MSMg01no486_b03.g1 PHD_FILE: MSMg01no486_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:16 2005
(476 letters)
>mm_chr9_4674376_4675252
Length = 877
Score = 907 bits (469), Expect = 0.0
Identities = 475/477 (99%), Gaps = 1/477 (0%)
Strand = Plus / Plus
Query: 1 agtggattatcggtagggtgaatgagtaaggtggacaacaagaggaatggtcacaccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggattatcggtagggtgaatgagtaaggtggacaacaagaggaatggtcacaccatg 260
Query: 61 attattgtgagtgaatgaatggacagcagttacatgaccttgatagatagcttttttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attattgtgagtgaatgaatggacagcagttacatgaccttgatagatagcttttttttt 320
Query: 121 ttt-aacattataggagaagtatagttttataaagaaaaccatgggttcttttgtggaca 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaacattataggagaagtatagttttataaagaaaaccatgggttcttttgtggaca 380
Query: 180 tgtggatattaaggtgtcaagtgtcaagcaggtgactgcacataagaatgtgaagcaagg 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtggatattaaagtgtcaagtgtcaagcaggtgactgcacataagaatgtgaagcaagg 440
Query: 240 aagagtaacaaatgagaaaaagcagatttaatgttcagtgttgggcggaagtgattatga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagtaacaaatgagaaaaagcagatttaatgttcagtgttgggcggaagtgattatga 500
Query: 300 aggatagtatgagattcacaaagaatgtgcaaagatattcattattaacactaggattgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggatagtatgagattcacaaagaatgtgcaaagatattcattattaacactaggattgc 560
Query: 360 gggaagaaatcatttaaaaatgaaagcaaaacatgaaacttggaagaaatgaaaggaggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaagaaatcatttaaaaatgaaagcaaaacatgaaacttggaagaaatgaaaggaggg 620
Query: 420 aatttcagagtgtgaaaggtcatcagtttaaatgctataaataaactttctgcagag 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatttcagagtgtgaaaggtcatcagtttaaatgctataaataaactttctgcagag 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space: 404022
Effective search space used: 404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
