BAC Information

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BAC

Clone NameMSMg01-486D22
Chromosome9 (Build37)
Map Location 19,561,080 - 19,561,713
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1
Downstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486D22.T7 (MSMg01no486_d22.b1)MSMg01-486D22.TJ (MSMg01no486_d22.g1)
ACCAG565493AG565494
length753777
length of high quality
(start - end)		593 (54 - 646)634 (75 - 708)
definitionCHROMAT_FILE: MSMg01no486_d22.b1 PHD_FILE: MSMg01no486_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:30 2005CHROMAT_FILE: MSMg01no486_d22.g1 PHD_FILE: MSMg01no486_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGGGGNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTATTCTCTTCCTATCTCTTCAACATAATACTCAAAG
TGCTTGCTACAACAAGACAACAAAAAGAGATCAAGGGGATATAAATTGGC
ACAGAAGAAATAAAGGTATTATTTGCAGATGACATGATAGTATGTATAAG
TGACCCCAAAAATTCTACCAGAGAACTTCTCCAGCTGCTAAACAACTTCA
ACAAAGTGGCTGGATATAAAATTAACTCCAATAAATTAGAAGCCTTCCTT
TATACAAATGATAAACACTCTGAGAAAGAAATTAAGGAAACAACTACCTT
CACAATAGCCACAGATAATATAAAACATCTTAGGGTAACTCTAATCAAGC
AAATGAAAGACTTGCATGACAATAACTTGAAGTCTCTCAAGAAGGAAATC
AAAGAAGATCTCAGAAAATGGAGAGATCTCCCATGCTCATGTATTGACAG
AATTATTATAGTAAAAAGATAGTCATCCTACCAAAGACAATCTACATATT
CAATGCAATCCCAATCAAAATCCCAACACAGTTCTATAAAGACATGGAAA
AAGATCAATTATCAAATTCACCTAGAAAGGCAAAAAACAAAAACAAAAAC
CAAAAACAAAAAAACAAAAACAAACACCAAAAAACAGGATAGTGAAAATA
ATCCAAAACAACAGCTTGGGGAATCACCATGACTGACCTCATGCTTTACT
ACN

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCCATTAAGCAGGTGACAGTGTGC
TTTAATTGCACACTGCAAAGGCAGCTGCTTCCATTTCACACTGCAGTGGA
AGCTGCTTCCATGGGAGTGATTTTGTTGCAAGACCAGGAAATGGTTGACA
AAGGGAATACTTAGTGTTTCATTGTCATTTTTGGGAAATATATTCTGACT
TTTCCTGAAAGCAAGTCACTAGGTTAAACCTATGCTCACTGAGATCTGAA
TATGTGAGCTTATGAAAGGAGAGGCTTTGAACCATTGTAGTGTGTTCAAA
ATTAATCACCATGAACTTTGCTATATCTCCGGTATAATGTACGACCACTT
ACTATAAACTGTTCTTTAAGAGTTAACTACTTTGTGTATTAAGGCATTCT
CTAATCATTTTTATAATTATATTCTCAATGAATTCATGTAGAGAAGAATT
GGAACATGTAATAATTTACCCTGCTTTGAATCTTCTTTAATTCCATTATG
CTGCTGTCTAACTTCTCTGTCACCAACATATTCCTTCACTAATGTCAAAG
ACAGATGATATTCTTTCCTCAGATTCAAATGATGCTGGGCCATTATGAAT
CCTACTCAACCATAAGTCTTATCTCTCCTAATATATTTTATCTCTATCTT
TCTTTTTGTCTCCTTGTCACTTTCACCATCCTCATCAGCATCTCATGAAG
AAGAGGTTGATTTTCAATGAGATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_d22.g1 MSMg01no486_d22.g1 CHROMAT_FILE:
MSMg01no486_d22.g1 PHD_FILE: MSMg01no486_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:30 2005
         (634 letters)



>mm_chr9_19560880_19561913
          Length = 1034

 Score = 1195 bits (618), Expect = 0.0
 Identities = 630/634 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccattaagcaggtgacagtgtgctttaattgcacactgcaaaggcagctgcttccat 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 834 tttccattaagcaggtgacagtgtgttttaattgcacactgcaaaggcagctgcttccat 775

                                                                       
Query: 61  ttcacactgcagtggaagctgcttccatgggagtgattttgttgcaagaccaggaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttcacactgcagtggaagctgcttccatgggagtgattttgttgcaagaccaggaaatgg 715

                                                                       
Query: 121 ttgacaaagggaatacttagtgtttcattgtcatttttgggaaatatattctgacttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ttgacaaagggaatacttagtgtttcattgtcatttttgggaaatatattctgacttttc 655

                                                                       
Query: 181 ctgaaagcaagtcactaggttaaacctatgctcactgagatctgaatatgtgagcttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 654 ctgaaagcaagtcactaggttaaacctatgctcactgagatctgaatgtgtgagcttatg 595

                                                                       
Query: 241 aaaggagaggctttgaaccattgtagtgtgttcaaaattaatcaccatgaactttgctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaaggagaggctttgaaccattgtagtgtgttcaaaattaatcaccatgaactttgctat 535

                                                                       
Query: 301 atctccggtataatgtacgaccacttactataaactgttctttaagagttaactactttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atctccggtataatgtacgaccacttactataaactgttctttaagagttaactactttg 475

                                                                       
Query: 361 tgtattaaggcattctctaatcatttttataattatattctcaatgaattcatgtagaga 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgtcttaaggcattctctaatcatttttataattatattctcaatgaattcatgtagaga 415

                                                                       
Query: 421 agaattggaacatgtaataatttaccctgctttgaatcttctttaattccattatgctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agaattggaacatgtaataatttaccctgctttgaatcttctttaattccattatgctgc 355

                                                                       
Query: 481 tgtctaacttctctgtcaccaacatattccttcactaatgtcaaagacagatgatattct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgtctaacttctctgtcaccaacatattccttcactaatgtcaaagacagatgatattct 295

                                                                       
Query: 541 ttcctcagattcaaatgatgctgggccattatgaatcctactcaaccataagtcttatct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttcctcagattcaaatgatgctgggccattatgaatcctactcaaccataagtcttatct 235

                                             
Query: 601 ctcctaatatattttatctctatctttctttttg 634
           || |||||||||||||||||||||||||||||||
Sbjct: 234 cttctaatatattttatctctatctttctttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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