Query= MSMg01no486_f06.b1 MSMg01no486_f06.b1 CHROMAT_FILE:
MSMg01no486_f06.b1 PHD_FILE: MSMg01no486_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:36 2005
(663 letters)
>mm_chr9_111594192_111595251
Length = 1060
Score = 1139 bits (589), Expect = 0.0
Identities = 632/663 (95%), Gaps = 27/663 (4%)
Strand = Plus / Minus
Query: 1 ctttcattatttaacttctcctgttctttaacagtggggcaacagtgcaggtagacagac 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttcattatttaactt---ctgttctttaacagtggggcaacagtgcaggtagacagac 685
Query: 61 agtgagttctattgaagaagaaaataactacaaatcaaagcaacagaaaaaagaatagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtgagttctattgaagaagaaaataactacaaatcaaagcaacagaaaaaagaatagga 625
Query: 121 agtggaaatggctatggtagtggagtatgtacccaaaaagcataggaactctgggtttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtggaaatggctatggtagtggagtatgtacccaaaaagcataggaactctgggtttga 565
Query: 181 accccagcaccaagtgctatttccattagaagacatcattatcaatcgctaatcctattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 accccagcaccaagtgctatttccattagaagacatcattatcaatcgctaatcctattg 505
Query: 241 ataaccagagctgagcatctaaaaaggagaatagcatcttcaattttaaaaaagaatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataaccagagctgagcatctaaaaaggagaatagcatcttcaattttaaaaaagaatgaa 445
Query: 301 aaatataccctaaaacctgaagatgaatgatttcttattgttagccagggtatgctttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatataccctaaaacctgaagatgaatgatttcttattgttagccagggtatgctttct 385
Query: 361 ccccaaggcagagctctatagaagacccaggaagtttcactcttgtggaagactcccttg 420
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 384 ccccaaggcagagctctatagaagacccgggaagtttcactcttgtggaaaactcccttg 325
Query: 421 gccctgtattagttctgacttcacatttgcacagacttgtggagtcctgtattgtccctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccctgtattagttctgacttcacatttgcacagacttgtggagtcctgtattgtccctc 265
Query: 481 atgtcagttggctaattatgtgtgagtgtgctttgattaatctacctatatctgtctgcc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgtcagttggctaattatgtgtgagtgtgctttgattaatctacctatatctgtctgcc 205
Query: 541 tgcctctatctatctatctatctatctatctatctatctatctatctatctatctatcta 600
|||| ||||||||||||||||||||||||||||||||
Sbjct: 204 tgcc------------------------tctatctatctatctatctatctatctatcta 169
Query: 601 tcttctgtcagtctgtctagtatctatctatctgtctgtctgcctgtctgtttacctatc 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 168 tcttctgtcagtctgtctagtatctatctatctgtctgtctgcctgtctttttacctatc 109
Query: 661 tct 663
|||
Sbjct: 108 tct 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1060
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1050
Effective search space: 685650
Effective search space used: 685650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_f06.g1 MSMg01no486_f06.g1 CHROMAT_FILE:
MSMg01no486_f06.g1 PHD_FILE: MSMg01no486_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:36 2005
(514 letters)
>mm_chr9_111535753_111536666
Length = 914
Score = 903 bits (467), Expect = 0.0
Identities = 503/515 (97%), Gaps = 2/515 (0%)
Strand = Plus / Plus
Query: 1 acagtgggccacctcctgctcaagaagccaaggcactttgcattctgcctcttgtctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtgggccacctcctgctcaagaagccaaggcactttgcattctgcctcttgtctttg 260
Query: 61 ctgggagaatggcatgacaagtctgggtgtctggcttcaggaaagagtgagggacaagga 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ctgggagaatggcatgacaagtctgggtctctggcttcaggaaagagtgagggacaagga 320
Query: 121 caagaaaagatgtagctattgtctcggtcagtttgtctcggtctggtcctaatacgcgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaaaagatgtagctattgtctcggtcagtttgtctcggtctggtcctaatacgcgcc 380
Query: 181 agtgagatttgaaagatggcttgtttcagtgtggtggttttgtggccgtcctttatgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgagatttgaaagatggcttgtttcagtgtggtggttttgtggccgtcctttatgcag 440
Query: 241 cattatgatggaaatctgactaacacagacgtcgttttctaaatgtggtttgtttagacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattatgatggaaatctgactaacacagacgtcgttttctaaatgtggtttgtttagacg 500
Query: 301 aagaacaggcatagttgggagcagaaaggcaacccatgaggctgcaagccttatctgaaa 360
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 aagagcaggcatagttgggagcagaaaggcaactcatgaggctgcaagccttatctgaaa 560
Query: 361 acgtaggcaggcctcatggctatagcagcaatagatctgatgctgcttccttcccactga 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 acgtaggcaggcctcatggctatagcagcaatagatctgacgctgcttccttcccactga 620
Query: 421 gaatcgctcacttgggaacagaaggtcccaggacaaaggctgtactgatgaacttcataa 480
||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 621 gaaccgcccacttgggaacagaaggtcccaggacaaaggctgtgctgatgtacttcataa 680
Query: 481 cactcc-ctgtggcggattgattacaacttccatc 514
||| || ||| ||||||||||||| ||||||||||
Sbjct: 681 cac-cctctgaggcggattgattaaaacttccatc 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
