BAC Information

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BAC

Clone NameMSMg01-486H05
Chromosome9 (Build37)
Map Location 46,253,168 - 46,408,764
singlet/doubletdoublet
Overlap genenone
Upstream geneDscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Downstream geneEG667890, 2900052N01Rik, D930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486H05.T7 (MSMg01no486_h05.b1)MSMg01-486H05.TJ (MSMg01no486_h05.g1)
ACCAG565651AG565652
length754780
length of high quality
(start - end)		620 (72 - 691)525 (78 - 602)
definitionCHROMAT_FILE: MSMg01no486_h05.b1 PHD_FILE: MSMg01no486_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:46 2005CHROMAT_FILE: MSMg01no486_h05.g1 PHD_FILE: MSMg01no486_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,253,168 - 46,253,787)(46,408,240 - 46,408,764)
sequence
NNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATGCG
CGGAATTCCAGAGCTTCCGTGTTGCAGCCAATCCCTCTACTTCCCAACTT
CATATTCCTTTAAATGACTTAGGAGGTAGTGTTCATCTCTAGAGCTTTGG
TGATCTTCATGGCAGTGCCTTGAGGACGCCATGAACATAAACACACTATG
TGTACAGCATGAGGCTATGCAGTCTCTCCCACACACTGTCTCATCTGAAT
GTCCCCATAGCGATCTGGGCACAGTGACATATGCAAAGCCAGGTGTGCAT
GCAGCTGGGTGTGAACACACGTCTCCTGGTGGTGACTCGCTCCCTTAGGC
TGTGACTTTGCGTATTTTTGTTTGAGAGAAACTTGCACGACGTACCAAGA
GGTGAAAGGACTTGTTCGAGGTCTCAGATTGAGTCATTGTCCACCATGTT
ATTGGACAGTTACCTTGCTGCCGGAAGTACTATCTAGGGTGTTGCCCTTA
GGGCACTGCTGATGGGGGACCCAAGGTATCTCGAAGCTGAGGCAAGTGTA
CCTATTGACACCCTTCTGTGGACTTTGGGTGTCTGGAGGGTTGACTCTTA
TCTATTTTGTTATATGCTGTAGCCCAATATCACAGCTTGGTACATGGCAC
ATGGTANGTCCTCAATACATAGATATAGATACTTGAAAAAAATAGGAAAG
TAATGGAAGAAGAAGAAGGAAGGAGGAAAGAAGAATGATAAGAAGAGGAA
AGAG

TTCCGATGATATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGGTTGCATTTCCTTCCAGA
CCCTCCTCCTGCCCATCATCAGGCATGCCCTTGGCCCCAGCTAGCAACAG
CAGCTGTTAGGAGATCCTATCTAGCCCTGGCTTGACATTTCAACAGCCCA
AGACCCGGAGATAAAGGTTGTCACTGAACAGAGTTCCACTGCCCTTGCCC
TCACCCTTCTCCCTCACTTCCCAGAGATTCACAAGGCATCAAGTGGGCAC
GGAGACGGTGTCTGTCTCTTGCTACTGCTGCAATTCCTACTCTGGGGGTG
GGAGGACCTTCAAAATGAATGAATACGAAGAAGCCGTTTATCACCTGTGC
TTTTATGATTGCCGAGTCTTGGGAGGGAGGGGGCAGTGATGTCCTTTCAG
ATAAGCATTTGAAGGAGGGGGGAGAAAGATTTTCAAAGCTTCCTTTGTTC
TCCTGGAGAGCCGAGCCATGGAGTTCTGGCAGACAGCCCAGGAGAAAGGA
GGATTTTAAAACAGTCTGAGCTGGCTTCCAAACCGCTTCCCCGTCCCTGT
CATCAATTAGGGATGTTACTTAACAAGGGTTTGGGGCAATGTCTCACCCA
GACCGCTCTTCTTAAATGGAAGCAGACTGGGGAAGAATTCCTGGGGGGTG
GGGGGGGCGCGTCCTCTTTTTCCCTTTCCCCCGTTCCCTTTTTTGTTGTT
ACCCTTTTTTTCTTCCCTCTTCCTCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_h05.b1 MSMg01no486_h05.b1 CHROMAT_FILE:
MSMg01no486_h05.b1 PHD_FILE: MSMg01no486_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:46 2005
         (620 letters)



>mm_chr9_46252968_46253987
          Length = 1020

 Score = 1123 bits (581), Expect = 0.0
 Identities = 610/620 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcagccaatccctctacttcccaacttcatattcctttaaatgacttaggaggtagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcagccaatccctctacttcccaacttcatattcctttaaatgacttaggaggtagtg 260

                                                                       
Query: 61  ttcatctctagagctttggtgatcttcatggcagtgccttgaggacgccatgaacataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatctctagagctttggtgatcttcatggcagtgccttgaggacgccatgaacataaa 320

                                                                       
Query: 121 cacactatgtgtacagcatgaggctatgcagtctctcccacacactgtctcatctgaatg 180
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 cacactatgtgtatagcatgaggctatgcagtctctcctacacactgtctcatctgaatg 380

                                                                       
Query: 181 tccccatagcgatctgggcacagtgacatatgcaaagccaggtgtgcatgcagctgggtg 240
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 381 tccccatagcgatctgggcacagtgacatacgcaaagccaggtgtgcatgcaactgggtg 440

                                                                       
Query: 241 tgaacacacgtctcctggtggtgactcgctcccttaggctgtgactttgcgtatttttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaacacacgtctcctggtggtgactcgctcccttaggctgtgactttgcgtatttttgt 500

                                                                       
Query: 301 ttgagagaaacttgcacgacgtaccaagaggtgaaaggacttgttcgaggtctcagattg 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgagagaaccttgcacgacgtaccaagaggtgaaaggacttgttcgaggtctcagattg 560

                                                                       
Query: 361 agtcattgtccaccatgttattggacagttaccttgctgccggaagtactatctagggtg 420
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 agtcattgcccaccatgttattggacaattaccttgctgccggaagtactatctagggtg 620

                                                                       
Query: 421 ttgcccttagggcactgctgatgggggacccaaggtatctcgaagctgaggcaagtgtac 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 ttgcccttagggcactgctgatgggggacccaaggtatcttgaagctgaggcaagtgtac 680

                                                                       
Query: 481 ctattgacacccttctgtggactttgggtgtctggagggttgactcttatctattttgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctattgacacccttctgtggactttgggtgtctggagggttgactcttatctattttgtt 740

                                                                       
Query: 541 atatgctgtagcccaatatcacagcttggtacatggcacatggtangtcctcaatacata 600
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 atatgctgtagcccaagatcacagcttggtacatggcacatggtaggtcctcaatacata 800

                               
Query: 601 gatatagatacttgaaaaaa 620
           ||||||||||||||||||||
Sbjct: 801 gatatagatacttgaaaaaa 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_h05.g1 MSMg01no486_h05.g1 CHROMAT_FILE:
MSMg01no486_h05.g1 PHD_FILE: MSMg01no486_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:46 2005
         (525 letters)



>mm_chr9_46408040_46408964
          Length = 925

 Score =  984 bits (509), Expect = 0.0
 Identities = 521/525 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaggttgcatttccttccagaccctcctcctgcccatcatcaggcatgcccttggccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 aaaaggttgcatttccttccagaccctcctcctgcccatcatcaggcatgcccttggccc 666

                                                                       
Query: 61  cagctagcaacagcagctgttaggagatcctatctagccctggcttgacatttcaacagc 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 665 cagctagcaacagcagctgttaggagatcctatctagccctgacttgacatttcaacagc 606

                                                                       
Query: 121 ccaagacccggagataaaggttgtcactgaacagagttccactgcccttgccctcaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ccaagacccggagataaaggttgtcactgaacagagttccactgcccttgccctcaccct 546

                                                                       
Query: 181 tctccctcacttcccagagattcacaaggcatcaagtgggcacggagacggtgtctgtct 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 545 tctccctcacttcccagagattcacaaggcatcaagtgggcacggagatggtgtctgtct 486

                                                                       
Query: 241 cttgctactgctgcaattcctactctgggggtgggaggaccttcaaaatgaatgaatacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cttgctactgctgcaattcctactctgggggtgggaggaccttcaaaatgaatgaatacg 426

                                                                       
Query: 301 aagaagccgtttatcacctgtgcttttatgattgccgagtcttgggagggagggggcagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 425 aagaagccgtttatcacctgtgcttttatgattgccgagtcttgggagggagggggcagc 366

                                                                       
Query: 361 gatgtcctttcagataagcatttgaaggaggggggagaaagattttcaaagcttcctttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gatgtcctttcagataagcatttgaaggaggggggagaaagattttcaaagcttcctttg 306

                                                                       
Query: 421 ttctcctggagagccgagccatggagttctggcagacagcccaggagaaaggaggatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttctcctggagagccgagccatggagttctggcagacagcccaggagaaaggaggatttt 246

                                                        
Query: 481 aaaacagtctgagctggcttccaaaccgcttccccgtccctgtca 525
           ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 245 aaaacagtctgagctggcttccaaaccgcttccccatccctgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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