Query= MSMg01no486_j07.b1 MSMg01no486_j07.b1 CHROMAT_FILE:
MSMg01no486_j07.b1 PHD_FILE: MSMg01no486_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:55 2005
(561 letters)
>mm_chr9_42873092_42874052
Length = 961
Score = 1000 bits (517), Expect = 0.0
Identities = 548/559 (98%), Gaps = 2/559 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaatgctttatcactaatgaatgtttcgaattcatcttctcctggtcttctcca 64
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 205 gaattcaaatgctttatcactaatgaatgcttcgaattcatcttctcctggtctcctcca 264
Query: 65 ttgctcactgagagtgacccactctgctaggcctggtgcttgcaatgacattggttttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgctcactgagagtgacccactctgctaggcctggtgcttgcaatgacattggttttcc 324
Query: 125 agtcttacacacagcatcctttcctgtagagcagctatagacttgcaaaccacaaacagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtcttacacacagcatcctttcctgtagagcagctatagacttgcaaaccacaaacagt 384
Query: 185 ccctctcattaaaattccttcaatcgttttccattaaatggggtggtggggacaggcatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctctcattaaaattccttcaatcgttttccattaaatggggtggtggggacaggcatc 444
Query: 245 caaacaccaagcatgatgtaagagggtaaatcaggcatttcttacctctaacctcagtta 304
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaacaccaagcatgacgtaagagggtaaatcaggcatttcttacctctaacctcagtta 504
Query: 305 agttagtatgtcctagtggccttcaggaccattcgtagggactttccctagaaagtggta 364
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 505 agttagtatgtcctagtggccttcaggaccactcctagggactttccctagaaagtggta 564
Query: 365 tctctaacactgctctatgtgaggccctctcatcaccaacataactactgagatcttttc 424
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 tctctaacactgctctatgtgaggccctctcgtcaccaacataactactgagatcttttc 624
Query: 425 ttgtttgttttgggttttttgtttttgtttg--tttttttttggttttttggttttttgg 482
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 ttgtttgttttgggttttttgtttttgtttggttttttttttggttttttggttttttgg 684
Query: 483 tttttcgagacaaggtttctctgtgtagccctggctgtcctggaactcactctgtagacc 542
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagacc 744
Query: 543 aggctggcctcaaactcag 561
|||||||||| |||||||
Sbjct: 745 aggctggcctggaactcag 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_j07.g1 MSMg01no486_j07.g1 CHROMAT_FILE:
MSMg01no486_j07.g1 PHD_FILE: MSMg01no486_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:55 2005
(627 letters)
>mm_chr9_43051730_43052756
Length = 1027
Score = 1145 bits (592), Expect = 0.0
Identities = 619/628 (98%), Gaps = 1/628 (0%)
Strand = Plus / Minus
Query: 1 attctctccttccttcgtgtaagtgctaggatagaactcaggcttagaacttagtgcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 attctctccttccttcgtgtaagtgctaggatagaactcaggcttagaacttagtgcctt 842
Query: 61 tacccataag-ccactgtaactttttagatggctctggttctctcttgagctaaggagct 119
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 841 tacccataagcccactgtaactttttaggtggctctggttctctcttgagctaaggagct 782
Query: 120 tctgcactcgctgtgacctatcacctgcttgtagcacttcatagcacagggacgagctct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tctgcactcgctgtgacctatcacctgcttgtagcacttcatagcacagggacgagctct 722
Query: 180 cctggacaccagttgcctgcctgagggaagcagttcattgagaaactagctgacagggtg 239
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 721 cctggacaccagttgcctgcctgagggaagcagttcatggagaaactagcttacagggtg 662
Query: 240 ggcaggatttttttgcgtcctcaggcttccggtctataagctgagagatctgcctttctg 299
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggcaggaccttcaggcgtcctcaggcttccggtctataagctgagagatctgcctttctg 602
Query: 300 tatagctcagatcattcaagcctgaaagtcaccgaatcaggctggctcccctccatctgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tatagctcagatcattcaagcctgaaagtcaccgaatcaggctggctcccctccatctgg 542
Query: 360 tttcccacctgagaatgaatggctgtccttgacattcagttatttctgttttcctccttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttcccacctgagaatgaatggctgtccttgacattcagttatttctgttttcctccttc 482
Query: 420 tgcaatggctaccgttgctccggcctgtttcccaccacaccctcagtggacagaagtata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgcaatggctaccgttgctccggcctgtttcccaccacaccctcagtggacagaagtata 422
Query: 480 atccggtgacaccataaacttagtttgcgcttctgctgaggcagtgaggtcgttggagct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atccggtgacaccataaacttagtttgcgcttctgctgaggcagtgaggtcgttggagct 362
Query: 540 ttgtagaaggtcttgagacagagaaaggactgagccacttccttctggattctccctcag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgtagaaggtcttgagacagagaaaggactgagccacttccttctggattctccctcag 302
Query: 600 actcgaggctcaggtggcttgtcctatc 627
||||||||||||||||||||||||||||
Sbjct: 301 actcgaggctcaggtggcttgtcctatc 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
