NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAGGCG
CGGAATTCATAAATCTTCCAATGAAGCAGAAGCTATGGTTCAAGTACTGA
ACATTATGAATCTTTTGATAGCCTGTGTATGGCCCCACATCCTTGTAATA
ACACATTCTAACGACAAACTCCAAAGTGACTCTGAAAATGAGTAAGCACA
GATTTGAAGGTGGCCTGCAACCCCAGGTTACATAGCCTGGATTTGAACCT
TGCTCTCCCATTAACCAGATTTATTCTCCCATGAACCATATGCATGACTT
TGATTAAGGCACAGGTTTGCTTTATGTTCACAAGGTCTCACAAACTTCAT
AATGTCATGTTAGGAAACAAGTGTCCACTGTACCTTGTAAAATTTTACTT
ACTTTTCCTCTATTCATTTTTTTAAATGGTGCTTCTAATTGGCCACCCAA
GTACCTGAAGCCAAGAGAGAAGAGTATATACCCAAGAAAGCAAGAGCTTC
AGGAAAGACTGGGTTACTCTTTCTCACTGGGCTAATCTCTACAATGGCTA
TATAAAGTATCCCTATGGCATGGTAGTATATCTGGACCGGTTAGGGTTGT
TGAGAACCAAAAATAGTATAGAAAGCTCACCATTTAAGCCAGCAGTTGTG
GATTCTTGACTAGGAACCAAACCAGGGGCAATTATGCTAACTAGCTTTGG
TATGAACCTATTAGTAGACACAAAATTATGGATT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAGTGAATGG
CTAAGAAGCACCTGAAAAAATGTTCAATATCTTTAATCATCAGAGAAATG
CAAAGCAAAGCAACCCTGACATTCCACCTCACACCATTCAGAATGGCTAA
GATCAAAAATTCATGTGACAGCAGATGCTGGCGAGGATGTAGAGAAAGAG
GAGAAAGAGGAATGTGGCTGTCTTTGTATTTGAAGCATAGATATCCAGAA
GTGAGAGTTCATCTTGGTAGATTTTACCTTTGATGAGTATGAAATGCGCC
TCTTTTTCTTTTTTGATAACTTTGGGTTGGAAGTCAATTTTATTTGATAT
TTGAATGGCTACTCCAGCTTGTTTCTTCAGACTATTTGCTTGAAAAATTG
TTTTCCAGCCTTTCACTCTGAGGCAGTATCTGTCCTTTTTCCTGAGGTGG
GTTTCCTGTAAGCAACAAAATGTTGGGTACTGTTTGTATAGACAGTCTAT
TCGTCTAAGTCTTTTTATTGGGGAATTGAGTCCATTGATGTTAAGAGAAA
TTAAATACCAATAATTGGTGCTTCCTGAATTTTGTTGGTAATGGTGGGAA
TCTGGTCTTGTGGCTGGCTTCTTTTAAGGTTGGTGAAAGATTACTTTCTT
GCTTTTTCTAGTGTGTGGGTTCCGTCCTTTTGTTGGTATTTTCCCTTTAN

Query= MSMg01no486_n12.b1 MSMg01no486_n12.b1 CHROMAT_FILE:
MSMg01no486_n12.b1 PHD_FILE: MSMg01no486_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:15 2005
         (568 letters)



>mm_chr9_6581175_6582144
          Length = 970

 Score =  820 bits (424), Expect = 0.0
 Identities = 473/490 (96%), Gaps = 2/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagctatggttcaagtactgaacattatgaatcttttgatagcctgtgtatggcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 agaagctatggttcaagtactgaacattatgaatcttttgatagcctatgtatggcccca 260

                                                                       
Query: 61  catccttgtaataacacattctaacgacaaactccaaagtgactctg--aaaatgagtaa 118
           |||||||||||||||||||||||| |||| |||||||||||||||||  |||||||||||
Sbjct: 261 catccttgtaataacacattctaatgacagactccaaagtgactctgtgaaaatgagtaa 320

                                                                       
Query: 119 gcacagatttgaaggtggcctgcaaccccaggttacatagcctggatttgaaccttgctc 178
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gcacatattcgaaggtggcctgcaaccccaggttacatagcctggatttgatccttgctc 380

                                                                       
Query: 179 tcccattaaccagatttattctcccatgaaccatatgcatgactttgattaaggcacagg 238
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccatgaaccagatttattctcccatgaaccatatgcatgactttgattaaggcacagg 440

                                                                       
Query: 239 tttgctttatgttcacaaggtctcacaaacttcataatgtcatgttaggaaacaagtgtc 298
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tttgcaagatgttcacaaggtctcacaaacttcataatgtcatgttaggaaacaaatgtc 500

                                                                       
Query: 299 cactgtaccttgtaaaattttacttacttttcctctattcatttttttaaatggtgcttc 358
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccgtaccttgtaaaattttacttacttttcctctattcatttttttaaatggtgcttc 560

                                                                       
Query: 359 taattggccacccaagtacctgaagccaagagagaagagtatatacccaagaaagcaaga 418
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 561 taattggccacccaagtacctgaagccaagagagaagagtgtatacccaagaaagcaaaa 620

                                                                       
Query: 419 gcttcaggaaagactgggttactctttctcactgggctaatctctacaatggctatataa 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 gcttcaggaaagactgggttactctttctcactgggctaatctctacaatggctatagaa 680

                     
Query: 479 agtatcccta 488
           ||||||||||
Sbjct: 681 agtatcccta 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 970
Length adjustment: 10
Effective length of query: 558
Effective length of database: 960
Effective search space:   535680
Effective search space used:   535680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)