Query= MSMg01no486_n21.b1 MSMg01no486_n21.b1 CHROMAT_FILE:
MSMg01no486_n21.b1 PHD_FILE: MSMg01no486_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:17 2005
(599 letters)
>mm_chr9_115626912_115627910
Length = 999
Score = 994 bits (514), Expect = 0.0
Identities = 563/580 (97%), Gaps = 2/580 (0%)
Strand = Plus / Plus
Query: 18 ccccccccccccc--gtgtgtattataccaaacatgttagtgtgtaaatttggaggagcc 75
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 cccccccccccccgtgtgtgtattataccaaacatgttagtgtgtaaatttggaggagcc 275
Query: 76 tgagaagaaagtctggagtctgtacccaactctagtacctgccatgtgacagtaatgaca 135
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgagaaaaaagtctggagtctgtacccaactctagtacctgccatgtgacagtaatgaca 335
Query: 136 cattgtcctccctccagggctgtggctttttctttaaggcaattgtttctccaacattga 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cattgtcctccctccagggctgtggctttttctttaaggcaattgtttctccaacattga 395
Query: 196 gagattatcaggatagaaatctcctaggaaagttgttctatcatccccaccctcacaggt 255
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct: 396 gagattatcaggatagaaatctcccaggaaagttgttatatcatccctaccctcacaggc 455
Query: 256 cattcaacaaatcaatacatttataaaacttacaacattcagtagaagaaactaaaatag 315
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 456 cagtcaacaaatcaatacatttataaaacttacaaaattcagtagaagaaactaaaatag 515
Query: 316 aaggctaaatctctaaaaataaaaatttaaaggtaggggaataaaaaccaatgtgcttga 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaggctaaatctctaaaaataaaaatttaaaggtaggggaataaaaaccaatgtgcttga 575
Query: 376 ttcttgtataggttcatgcaaacccaggcaggtccgttgtatttccacacctcccatggt 435
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 576 ttcttgtataggttcatgcaaacccaggcaggttcgttgtatttccacatctcccatggt 635
Query: 436 tgcttgtgtgcattgacttcaaacttgaaatcgatggcggatggtgtagaagaatttgcc 495
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 636 tgcttgtgtgtattgactttaaacttgaaatcgatggcagatggtgtagaagaatttgcc 695
Query: 496 ttctatagcctggggccatggctcagtgggttgtacacttgctgcctaccatgagcaatt 555
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct: 696 ttctatagcctggggccatgcctcagtgggttgtatacttgctgcctaccatgagcaact 755
Query: 556 gatttggattggcaactcctggatggaaagctggtctaat 595
||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gatttggattggcaactcctggatggaaagctggtctaat 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_n21.g1 MSMg01no486_n21.g1 CHROMAT_FILE:
MSMg01no486_n21.g1 PHD_FILE: MSMg01no486_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:17 2005
(560 letters)
>mm_chr9_115810677_115811641
Length = 965
Score = 687 bits (355), Expect = 0.0
Identities = 389/403 (96%), Gaps = 5/403 (1%)
Strand = Plus / Minus
Query: 1 cattgctcagccaggaggctctctgaaacacaaaccgatcattaaagacagaaggaaaat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 403 cattgctcagccaggaggctctctgaaacacaaaccaatcattaaagacagaaggaaaat 344
Query: 61 atttgagccaaccaggctgtggccgtgtactgtcctggacaatatcagatatttctgttt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 343 atttgagccaaccaggctgtggccatgtactgtcctggacaatatcagatatttctgttt 284
Query: 121 ctagtttattgggtaaag-----tatgtggccaaacctgacaagagcaggatcagaagat 175
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 283 ctagtttattgggtaaagtagattatgtggccaaacctgacaagaacaggatcagaagat 224
Query: 176 aatgataatctttcctcagagaagatttataataacccaaggagataaacctctgggtgt 235
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 223 aatgataatctttcctcagagaagatttataataacctaaggagataaacctctgggtgt 164
Query: 236 ttttgtgaaggagttttccaagaggattaaatgaggagagataacacaccctaaatgcac 295
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 163 ttttgtgaaggagttttccaagaggattaaatgaggagagataacacaccctgaatgcac 104
Query: 296 atgtttgtgaataagaatatagcctaccccacaggccatctggaagaggaaagaatgcaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 103 atgtttgtgaataagaatatagcctaccccacaggccatctggaagaggaaagaatgtga 44
Query: 356 aaactcagagggcagaaatggtaaaagcatatcaattatagtt 398
||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 43 aaactcagagggcagaattggtaaaagcatatcagttatagtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 965
Length adjustment: 10
Effective length of query: 550
Effective length of database: 955
Effective search space: 525250
Effective search space used: 525250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
