BAC Information

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BAC

Clone NameMSMg01-486P22
Chromosome9 (Build37)
Map Location 19,841,435 - 19,842,100
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866
Downstream geneOlfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486P22.T7 (MSMg01no486_p22.b1)MSMg01-486P22.TJ (MSMg01no486_p22.g1)
ACCAG566066AG566067
length750785
length of high quality
(start - end)		695 (56 - 750)501 (74 - 574)
definitionCHROMAT_FILE: MSMg01no486_p22.b1 PHD_FILE: MSMg01no486_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:28 2005CHROMAT_FILE: MSMg01no486_p22.g1 PHD_FILE: MSMg01no486_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATC
CGCGGAATTCCTCCATTTATTGCTTGTATAAAGTATAGGAAGCATACAAC
TGTGTGTGGTGGAACACAAGATTAATCCCGGTACTTTGAGGCAGAGGAAG
GGAGATCTCTGAGTTTGAGTCCAGCTTAGTCTATCTACTGAGCAAGCATC
AGGCCATCTAGTTGAAAAAAGAAAGAAATGTATTACTAAATGATTGATAA
CATATTTCTCTTATTTTTCAAGAGAACAAGTAGGAAGTATTATTTTAAAG
GGTGTATTTTTAATCAACTTTTGCTTCTTCCTTTTGACTCCAGCAAAATA
TAGAATTTGCTCATTGACACTTTCAGTATGTTCTGCATGTAGGTCATTAG
TTTGTTTTTTACTGGTATCTTTTAAATTTTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTTATTTATTTATATTCCAAAGGC
TGAACCCCCTGGAGACCCTCTACTGAGACCCTCCCTCATCCCTCTCCTCC
TCCGAGAGGTTAGGCCCATCTCTGGATATCCCTCCATCTAGTTAAACTAA
CTCTGGTAATCTGTTCTAGACTTCTAGCTCCTTCTTACTCTTTTGTTCAT
TCTTTCTTCAGCTATATCTGGCTTCTTCTCTCTCAGCATCATGCCCTGAT
AAAATGTCTTTTTTTCCCCCTTTGAGTTGTTCCCTCTCTTTTCTTCTGAG


ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTCGCACCTGCGTACAAGGCTTGT
TTACTAGTTAGGCACAGCGGAGGCCAGCGCCATCTTATAATGGCGATTGT
TCGAGGCACACACGGCTCTCCTCAGAGATTACTGGCAGCACGCACGCGAT
TGCTCGCAGCACGTACCGGCTCTCCACAGGGTATAGTAGCTGGGTCTGGC
ATTTGCGTTCTCTTAGGGTCTGTATAACATCTGTCAGGGATCATCTGGCT
TTCATAACCTCTTGTGAGAAGTCTGGTGTACTTCTAATAGGCCAGCGTTT
ATATATTACTTGACCTTTTTCCCTTACTACTTTTAATATTCTATCTTTAT
TTAGTGCATTTGGTGTTTTGATTATTATGTGTCAGGAGGAATTTCTTTTC
TGGTCCAGTCTATTTGGAGTTCTGTAGGCTTCTTGTATGTTCATGGGCAT
CTCTTTCTTTCTTTCTTTCTCTCCTTCTTTCTTTCTTCCTTTTTTTTTTT
TTTTTTTTTTTTGGGTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGGCT
CTCCTGGAACTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCGG
CCTGGCTCTGCCTCCCAAGTGCTGGGATTAAAGGAATGCGCCACCACATA
TGGCAGGCATCGCTTTGCTTAAGGTAAGAAAATTTTCCTCCACCATTTTG
TTGAAGAATTTTACTGGGCCTCTTAAGTTGAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_p22.b1 MSMg01no486_p22.b1 CHROMAT_FILE:
MSMg01no486_p22.b1 PHD_FILE: MSMg01no486_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:28 2005
         (695 letters)



>mm_chr9_19841370_19842464
          Length = 1095

 Score = 1094 bits (566), Expect = 0.0
 Identities = 650/700 (92%), Gaps = 39/700 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcctccatttattgcttgtataaagtataggaagcatacaactgtgtgtggtggaac 60
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aattcctccatttaatgtttgtataaagtataggaagcatacaactgtgtgtggtggaac 672

                                                                       
Query: 61  acaagattaatcccggtactttgaggcagaggaagggagat---ctctgagtttgagtcc 117
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 671 acaagattaatcccggtactttgaggcagaggaagggagatctcctctgagtttgagtcc 612

                                                                       
Query: 118 agcttagtctatctactgagcaagcatcaggccatctagttgaaaaaagaaagaaatgta 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 agcttagtctatctactgagcaagcatcaggccatctagttgaaaaaagaaagaaatgta 552

                                                                       
Query: 178 ttactaaatgattgataacatatttctcttatttttcaagagaacaagtaggaagtatta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttactaaatgattgataacatatttctcttatttttcaagagaacaagtaggaagtatta 492

                                                                       
Query: 238 ttttaaagggtgtatttttaatcaacttttgcttcttccttttgactccagcaaaatata 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 491 ttttaaagggtgtatttttaatcaacttttgcttcttccttttgactccagcaaaatatc 432

                                                                       
Query: 298 gaatttgctcattgacactttcagt-atgttctgcatgtaggtcattagtttgtttttta 356
           |||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 431 gaatttgctcattgactctttca-tcatgttctgcatgtaggtcattagtttgtttttta 373

                                                                       
Query: 357 ctggtatcttttaaatttttatttatttatttatttatttatttatttatttatttattt 416
           |||||||||||||||                                |||||||||||||
Sbjct: 372 ctggtatcttttaaa--------------------------------tatttatttattt 345

                                                                       
Query: 417 atttatttatttatttatattccaaaggctgaaccccctggagac-cctctactgagacc 475
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 344 atttatttatttatttatattccaaaggctgaaccccctggagactcc-ctactgagacc 286

                                                                       
Query: 476 ctccctcatccctctcctcctccgagaggttaggcccatctctggatatccctccatcta 535
           ||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 285 ctccctcatccctcttctcctcctagaggttaggcccatccctggatatccctccatcta 226

                                                                       
Query: 536 gttaaactaactctggtaatctgttctagacttctagctccttcttactcttttgttcat 595
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 225 gttaaactaactctggtaatctgttctagtcttctagctccttcttactcttttgttcat 166

                                                                       
Query: 596 tctttcttcagctatatctggcttcttctctctcagcatcatgccctgataaaatgtctt 655
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 165 tctttcttcggctatatctggcttgttctctctcagcatcatgccctgataaaatgtctt 106

                                                   
Query: 656 tttttccccctttgagttgttccctctcttttcttctgag 695
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 105 ttttcccccctttgagttgttccctctcttttcttctgag 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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