BAC Information

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BAC

Clone NameMSMg01-487A08
Chromosome9 (Build37)
Map Location 71,640,487 - 71,641,065
singlet/doubletsinglet
Overlap genenone
Upstream geneLipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487A08.T7 (MSMg01no487_a08.b1)MSMg01-487A08.TJ (MSMg01no487_a08.g1)
ACCAG566085AG566086
length747744
length of high quality
(start - end)
597 (74 - 670)245 (79 - 323)
definitionCHROMAT_FILE: MSMg01no487_a08.b1 PHD_FILE: MSMg01no487_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:30 2005CHROMAT_FILE: MSMg01no487_a08.g1 PHD_FILE: MSMg01no487_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGATCGG
CGGAATTCTGTGTTTATTCATGATACTGGTAATAAGAAAGTTTCAAATTT
TACAGAGTTTTGAATTTTGGATCTTATGTTAGAATCTGAGATGTCTGTAT
GAACCCAAAGCCCATATTAGAGATGCTTAGCTTGTATTATAGCCACACAA
TACAATAAAATACCCACAAGTCTATACTCAGGTAACCCAGATAACCAAGG
GGGAGATAAAGAATAGTTCTCTGCAGATAGAATTCCAGTTCCTATATGAG
TAATAAATGGGGGGTTTTATATAATATTCTTTGAAGGAATAAGAGATTAT
AATATATATAATGATTGGTTAATAAAGGAACTTTAAAGTTCTAATTAGGC
AAATCCGAGGGTAATTATTATCAATAGCACAGTCTACCAAATGATATTAA
ATTACCAAAAAGTTTAGATGAAATGGGACATTTACATAGTCTCAAAACAT
GTTCCTTAAGGTGCTTATTAAAGGTACACCTTTAACGCCAGCACTCAGGA
AGCAGAGGCAAGTGGATCTCTGTGAGTGTCTACAGAGCAAGTTCCAGGAC
AGCCAGGGCTTCATAGAGAAGACCTATCCCTTGAAAATCAACCAACCAAC
CAACAAAACAAACAAACAAACAAACAAACAAACAAATAAAAACCAAAAAA
ACCACAAAAAAAAAAAAAAGAAAGAAAGATAGATACACCCAACTTTG
CCTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTACGTACCCAAAAGACCTTG
AACACCTGATTCTCCTGCCTCTACCGGCTGAGTGCTCAGATTACAGGAGT
ATGCCATCGTCTGACCTCAAATTGACTTTATCTTTCTTTCTCTTTTGGGA
GGGAGTGGGGGTGAGGAGGTGTTTTGAGACAGGGTTTCTCTGTGTAGCCC
TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAAAG
AACCCACCTGCCTATTCTTCTTTTTTGTTGGGATTAGAAGCATGCACCAC
TACTACCTAGCTTTTTCTTTGTTTCTTCCTGTTTGTTTTAAAATATATTT
TATGTGTAGGAGTGTTTCGCCAGCATTTATGTGCACTGTTTTGCTAATGA
AGGATCTGATGTTATTTGGGGTGTCTGCCTCTTGAAGGTGAGTTGGCGGT
TTTTCTCCTGTAGCCTTTTGATTGTGGTTTAGGCATCTTGACCATAGATA
TCATGTATCGTGGAGAAGTTCCCTGATGTCTATCTGGGGTCTACAGGTCT
CTCATGCTTGGATGTCTATTTCTCTGGATTTGAGAGGTTTCTGCTATAAT
TTCCTCAAGTCTTTCATGTTTCCCTCAACTCCTATCTCTTAGAATTTTAG
GTGTGGTCTCTTGATCATATTCCAGAATTTTTGGATTGTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_a08.b1 MSMg01no487_a08.b1 CHROMAT_FILE:
MSMg01no487_a08.b1 PHD_FILE: MSMg01no487_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:30 2005
         (597 letters)



>mm_chr9_71640487_71641478
          Length = 992

 Score = 1006 bits (520), Expect = 0.0
 Identities = 566/584 (96%), Gaps = 5/584 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactggtaataagaaagtttcaaattttacagagttttgaattttggatcttatgttaga 60
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 579 tactggtaataagaaagtttcgaattttacagagttttgaattttgaatcttatgttaga 520

                                                                       
Query: 61  atctgagatgtctgtatgaacccaaagcccatattagagatgcttagcttgtattatagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atctgagatgtctgtatgaacccaaagcccatattagagatgcttagcttgtattatagc 460

                                                                       
Query: 121 cacacaatacaataaaatacccacaagtctatactcaggtaacccagataaccaaggggg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 459 cacacaatacaataaaatacccacaagtctatactaaggtaacccagataaccaaggggg 400

                                                                       
Query: 181 agataaagaatagttctctgcagatagaattccagttcctatatgagtaataaatggggg 240
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 399 agataaaggatagttctctgcagatagaattccagttcttatatgagtaataaatggggg 340

                                                                       
Query: 241 gttttatataatattctttgaaggaataagagattataatatatataatgattggttaat 300
           ||||||||||||| ||  ||||||||||||||||     |||||||||||||||||||||
Sbjct: 339 gttttatataatagtcaatgaaggaataagagat-----tatatataatgattggttaat 285

                                                                       
Query: 301 aaaggaactttaaagttctaattaggcaaatccgagggtaattattatcaatagcacagt 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aagggaactttaaagttctaattaggcaaatccgagggtaattattatcaatagcacagt 225

                                                                       
Query: 361 ctaccaaatgatattaaattaccaaaaagtttagatgaaatgggacatttacatagtctc 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 224 ctaccaaatgatattaaattaccaaaaagtttagatgaactgggacatttacatagtctc 165

                                                                       
Query: 421 aaaacatgttccttaaggtgcttattaaaggtacacctttaacgccagcactcaggaagc 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 164 aaaacatgttccttaaggtgcttattaaaggtacacctttaatgccagcactcaggaagc 105

                                                                       
Query: 481 agaggcaagtggatctctgtgagtgtctacagagcaagttccaggacagccagggcttca 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aaaggcaagtggatctctgtgagtgtctacagagcaagttccaggacagccagggcttca 45

                                                       
Query: 541 tagagaagacctatcccttgaaaatcaaccaaccaaccaacaaa 584
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  cagagaagacctatcccttgaaaatcaaccaaccaaccaacaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 992
Length adjustment: 10
Effective length of query: 587
Effective length of database: 982
Effective search space:   576434
Effective search space used:   576434
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)